View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_high_4 (Length: 524)
Name: NF10201A_high_4
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 246 - 513
Target Start/End: Original strand, 43239075 - 43239342
Alignment:
| Q |
246 |
catgtaaactattgtcttatacatgattcatacatttttctatgctgttttgttagtaattgttaacatcattaatgagtgtttcattcaatttgcagat |
345 |
Q |
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| T |
43239075 |
catgtaaactattgtcttatacatgattcatacatttttctatgctgttttgttagtaattgttaacatcattaatgggtgtttcattcaatttgcagat |
43239174 |
T |
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| Q |
346 |
tcatggcaacaagtggggttgatgttggtgacaggcttcaactgtggttggatattcagtttctctaacctgataatggttccattaggttggacatggg |
445 |
Q |
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| T |
43239175 |
tcatggcaacaagtggggttgatgttggtgacaggcttcaactgtggttggatattcagtttctctaacctgataatggttccattaggttggacatggg |
43239274 |
T |
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| Q |
446 |
gtatcatattgctctttgttattggactctacacagcttatgctaattggctcttggcagcttttcat |
513 |
Q |
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| T |
43239275 |
gtatcatattgctctttgttattggactctacacagcttatgctaattggctcttggcagcttttcat |
43239342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 43238834 - 43239044
Alignment:
| Q |
7 |
atatgtgtaccaaa-tcttgcgtttttggaaattggaatgagttaacatattcaccatggaggttgaaggtagagcaagcaatgataactctctcactct |
105 |
Q |
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| T |
43238834 |
atatgtgtaccaaactcttgcgtttttggaaattggaatgagttaacatattcaccatggaggttgaaggtagagcaagcaatgataactctctcactct |
43238933 |
T |
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| Q |
106 |
caacctagaacatggtcaagaagacaagaatatctcaaatgattcttatgatctttccactgctcatactattgacaaaggtatattactc-tattctca |
204 |
Q |
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| T |
43238934 |
caacctagaacatggtcaagaagacaagaatatctcaaatgattcttatgacctttccactgctcatactattgacaaaggtatattactcttattctca |
43239033 |
T |
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| Q |
205 |
gttaaattatg |
215 |
Q |
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| T |
43239034 |
gctaaattatg |
43239044 |
T |
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