View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_100 (Length: 303)
Name: NF10201A_low_100
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_100 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 48192226 - 48192520
Alignment:
| Q |
5 |
cagaatagggtctcaattatatgaaccattttctcaccttccatagattcaacaatagcttgatctgtcaaaatatatgctaccttcaagtaagggaaaa |
104 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48192226 |
cagaataggatctcaattatatgaaccattttctcaccttccatagattcaacaatagcttgatctgtcaaaatatatgctaccttcaagtaagggaaaa |
48192325 |
T |
|
| Q |
105 |
gttcaaagaaaaacttctgaaccataatttcttcagaaagcataataattcttgtggaatttaagcctctatggagtccaggccaagttttatgtatcct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48192326 |
gttcaaagaaaaacttctgaaccataatttcttcagaaagcataataattcttgtggaatttaagcctctatggagtccaggccaagttttatgtatcct |
48192425 |
T |
|
| Q |
205 |
atcagtaagtgcttcagtgaaatatgcagcaattctctgcatagtgtctccatcaggaattgcaagctgagaaatctgttcaagtgttgtgtttg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48192426 |
atcagtaagtgcttcagtgaaatatgcagcaattctctgcatagtgtcttcatcaggaattgcaagctgagaaatctgttcaagtgttgtgtttg |
48192520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 2086335 - 2086617
Alignment:
| Q |
17 |
tcaattatatgaaccattttctcaccttccatagattcaacaatagcttgatctgtcaaaatatatgctaccttcaagtaagggaaaagttcaaagaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
2086335 |
tcaattatatgaaccattttctcaccttccatagattcaacaatagcttgatttgtcaaaatatatgctaccttcaaaaaagggaaaagctcaaagaaaa |
2086434 |
T |
|
| Q |
117 |
acttctgaaccataatttcttcagaaagcataataattcttgtggaatttaagcctctatggagtccaggccaagttttatgtatcctatcagtaagtgc |
216 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||| |||||| |
|
|
| T |
2086435 |
atttctgaaccataatttcttcagaaagcataataattcttgtggaatttaaggctctatggagtcctggccaggttttgagtatcctatcagcaagtgc |
2086534 |
T |
|
| Q |
217 |
ttcagtgaaatatgcagcaattctctgcatagtgtctccatcaggaattgcaagctgagaaatctgttcaagtgttgtgtttg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2086535 |
ttcagtgaaatatgcagcaattctctgcatagtgtctccatcaggagttgcaagctgagaaatctgttcaagtgttgtgtttg |
2086617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University