View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_102 (Length: 297)
Name: NF10201A_low_102
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_102 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 11225565 - 11225287
Alignment:
| Q |
19 |
acatcaagcaatcagttcgcataattttgattttacaatcaattctcagaattttgtcaacaatgtgtaacacttgtactacatgcacaacatttaatca |
118 |
Q |
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| T |
11225565 |
acatcaaacaatcagttcgcataattttgattttacaatcagttctcagaattttgtcaagaatgcgtaacacttgtactacatgcacaacatttaatca |
11225466 |
T |
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| Q |
119 |
accaacacacccaaaagtataattacagctatatttttcaatcagtttgcataatccttttcaattaaataatcagcttacattcaggtacacattaaac |
218 |
Q |
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| T |
11225465 |
accaacacacccaaaagtatacttacagctatatttttcaatcaacttgcagaatccttttgaattaaataatcagcttacattcaggtacacattaaac |
11225366 |
T |
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| Q |
219 |
aatcagttcacagaattttgattttacaatcagtttccagaattttatcaacaatgtgcagcacttatagtacatgcat |
297 |
Q |
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| T |
11225365 |
aatcagttcacaaaattttgattttacaatcagtttccagaattttatcaacaatgtgcaacacttatagtacatgcat |
11225287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 27 - 236
Target Start/End: Complemental strand, 11225366 - 11225158
Alignment:
| Q |
27 |
caatcagttcgcataattttgattttacaatcaattctcagaattttgtcaacaatgtgtaacacttgtactacatgcacaacatttaatcaaccaacac |
126 |
Q |
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| T |
11225366 |
caatcagttcacaaaattttgattttacaatcagtttccagaattttatcaacaatgtgcaacacttatagtacatgcataacatttaatcaatcaacac |
11225267 |
T |
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| Q |
127 |
acccaaaagtataattacagctatatttttcaatcagtttgcataatccttttcaattaaataatcagcttacattcaggtacacattaaacaatcagtt |
226 |
Q |
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| T |
11225266 |
acccaaaagtatatttacagctatctttttccatcagtttgcagaatccttttcaattaaacaaccaacttacattcaggtacacatcaaac-attagtt |
11225168 |
T |
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| Q |
227 |
cacagaattt |
236 |
Q |
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| T |
11225167 |
cgcagaattt |
11225158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 75 - 296
Target Start/End: Complemental strand, 11225156 - 11224937
Alignment:
| Q |
75 |
tcaacaatgtgtaacacttgtactacatgcacaacatttaatcaaccaacacacccaaaagtataattacagctatatttttcaatcagtttgcataatc |
174 |
Q |
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| T |
11225156 |
tcaacaatgtgtaactcttatactacatgaacaacatataatcaaccaacacgccttaaagtatacttacatccatctttttcaattaatttgcagaatc |
11225057 |
T |
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| Q |
175 |
cttttcaattaaataatcagcttacattcaggtacacattaaacaatcagttcacagaattttgattttacaatcagtttccagaattttatcaacaatg |
274 |
Q |
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| T |
11225056 |
tttttcaattaaacaatcagcttacaatcaggtaaacattaaacaatcaatt-tcagaattttgattttgtaatcagttcgcagaatatt-tcaacaatg |
11224959 |
T |
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| Q |
275 |
tgcagcacttatagtacatgca |
296 |
Q |
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| T |
11224958 |
tgtaactcttatactacatgca |
11224937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 11225000 - 11224891
Alignment:
| Q |
41 |
aattttgattttacaatcaattctcagaattttgtcaacaatgtgtaacacttgtactacatgcacaacatttaatcaac-caacacacccaaaagtata |
139 |
Q |
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| T |
11225000 |
aattttgattttgtaatcagttcgcagaatatt-tcaacaatgtgtaactcttatactacatgcacaacatttaatcaacttaacacacccaaaagtata |
11224902 |
T |
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| Q |
140 |
attacagctat |
150 |
Q |
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| T |
11224901 |
cttacaactat |
11224891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 296
Target Start/End: Complemental strand, 11225592 - 11225479
Alignment:
| Q |
183 |
ttaaataatcagcttacattcaggtacacattaaacaatcagttcacagaattttgattttacaatcagtttccagaattttatcaacaatgtgcagcac |
282 |
Q |
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| T |
11225592 |
ttaaacaatcaacttacaatcagaaatacatcaaacaatcagttcgcataattttgattttacaatcagttctcagaattttgtcaagaatgcgtaacac |
11225493 |
T |
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| Q |
283 |
ttatagtacatgca |
296 |
Q |
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| T |
11225492 |
ttgtactacatgca |
11225479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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