View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_105 (Length: 295)

Name: NF10201A_low_105
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_105
NF10201A_low_105
[»] chr7 (4 HSPs)
chr7 (7-287)||(9905631-9905928)
chr7 (109-169)||(9905208-9905268)
chr7 (108-154)||(48737256-48737302)
chr7 (109-154)||(48737958-48738003)
[»] scaffold0417 (2 HSPs)
scaffold0417 (108-263)||(9222-9378)
scaffold0417 (135-219)||(8896-8980)
[»] chr3 (1 HSPs)
chr3 (107-219)||(35274439-35274551)
[»] chr2 (2 HSPs)
chr2 (111-217)||(17737496-17737602)
chr2 (107-219)||(17736976-17737088)
[»] chr8 (3 HSPs)
chr8 (110-155)||(33076220-33076265)
chr8 (137-183)||(7656071-7656117)
chr8 (111-155)||(9135044-9135088)
[»] chr5 (1 HSPs)
chr5 (109-206)||(43450122-43450219)
[»] chr4 (2 HSPs)
chr4 (109-218)||(32160311-32160420)
chr4 (109-217)||(32160987-32161095)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 287
Target Start/End: Complemental strand, 9905928 - 9905631
Alignment:
Q  7 gtctacttgcagatatttgagagaaagtgaaaatgctgttttgcgccaatggattgtggagctccctttaccttacagnnnnnnnnntaatgta------ 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||          
T  9905928 gtctacttgcagatatttgagagaaagtgaaaatgctgttttgcgccaatggattgtggagctccctttaccttacagaaaagaaaataatgtacaagag 9905829  T
Q  101 -----------caagagtggagttcaggtacgctccatttaggtaatgcttcatttagttcatttaaactttggatggaagacacatgacaaaattaaat 189  Q
               ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||    
T  9905828 taaataatatacaagagtggagttcaagtacgctccatttaggtaatgcttcatttagtccatttaagctttggatcgaagacacatgacaaaattaaat 9905729  T
Q  190 ataaaggttgagatttatttaattaaaatacagaacatgtattttattcaaaaacaaaattagtttcttcttctccttctcacactcccatattcttc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9905728 ataaaggttgagatttatttaattaaaatacagaacatgtattttattcaaaaacaaaattagtttcttcttctccttctcacactcccatcttcttc 9905631  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 9905208 - 9905268
Alignment:
Q  109 gagttcaggtacgctccatttaggtaatgcttcatttagttcatttaaactttggatggaa 169  Q
    ||||||||||| |||||||||||||||||||  ||||||| ||||||||||||||||||||    
T  9905208 gagttcaggtatgctccatttaggtaatgctcaatttagtccatttaaactttggatggaa 9905268  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 48737256 - 48737302
Alignment:
Q  108 ggagttcaggtacgctccatttaggtaatgcttcatttagttcattt 154  Q
    |||||| ||||| ||||||||||||||||||| |||||||| |||||    
T  48737256 ggagtttaggtatgctccatttaggtaatgctccatttagtccattt 48737302  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 48738003 - 48737958
Alignment:
Q  109 gagttcaggtacgctccatttaggtaatgcttcatttagttcattt 154  Q
    ||||| ||||| ||||||||||||||||||| |||||||| |||||    
T  48738003 gagtttaggtatgctccatttaggtaatgctccatttagtccattt 48737958  T

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Target: scaffold0417 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 108 - 263
Target Start/End: Complemental strand, 9378 - 9222
Alignment:
Q  108 ggagttcaggtacgctccatttaggtaatgcttcatttagttcatttaaactttggatggaagacacatgacaaaattaaatataaaggttgagatttat 207  Q
    |||||||||||| |||||||||||||  |||| |||||| | ||||||| ||| ||||||||||||  || |||||||||||  || |||||||||||||    
T  9378 ggagttcaggtatgctccatttaggttttgctccatttaatccatttaagcttcggatggaagacatgtggcaaaattaaattcaagggttgagatttat 9279  T
Q  208 ttaattaaaatacagaacatgtattttattcaa-aaacaaaattagtttcttcttct 263  Q
    |||||||||||| ||||||||||||||||| || |||  ||||||||||||||||||    
T  9278 ttaattaaaataaagaacatgtattttatttaataaaataaattagtttcttcttct 9222  T

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Target: scaffold0417; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 8896 - 8980
Alignment:
Q  135 atgcttcatttagttcatttaaactttggatggaagacacatgacaaaattaaatataaaggttgagatttatttaattaaaata 219  Q
    ||||| |||||| | ||||||| |||  |||||||||||  || |||||||||||  || |||||||||||||||||||||||||    
T  8896 atgctccatttaatccatttaagcttcagatggaagacatgtggcaaaattaaattcaagggttgagatttatttaattaaaata 8980  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 35274439 - 35274551
Alignment:
Q  107 tggagttcaggtacgctccatttaggtaatgcttcatttagttcatttaaactttggatggaagacacatgacaaaattaaatataaaggttgagattta 206  Q
    |||| |||||||| ||||||||||||||||| | |||||||| ||||||||||||||||||||||||  || || ||||||||  || ||||||||||||    
T  35274439 tggaattcaggtatgctccatttaggtaatgttccatttagtccatttaaactttggatggaagacatgtggcataattaaattcaagggttgagattta 35274538  T
Q  207 tttaattaaaata 219  Q
    |||||||||||||    
T  35274539 tttaattaaaata 35274551  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 17737602 - 17737496
Alignment:
Q  111 gttcaggtacgctccatttaggtaatgcttcatttagttcatttaaactttggatggaagacacatgacaaaattaaatataaaggttgagatttattta 210  Q
    ||||||||| ||||||||||||||||||| |||||| | ||||||   |||| ||| ||||||  |  ||||||||||| ||||||||||||||||||||    
T  17737602 gttcaggtatgctccatttaggtaatgctccatttaatccatttaggttttgaatgaaagacatgtagcaaaattaaatttaaaggttgagatttattta 17737503  T
Q  211 attaaaa 217  Q
    || ||||    
T  17737502 ataaaaa 17737496  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 17736976 - 17737088
Alignment:
Q  107 tggagttcaggtacgctccatttaggtaatgcttcatttagttcatttaaactttggatggaagacacatgacaaaattaaatataaaggttgagattta 206  Q
    ||||||||||||| ||||||||||||||||  |  ||||||| ||||| |  ||| |||| ||||||  || ||||||| ||| ||| ||||||||||||    
T  17736976 tggagttcaggtatgctccatttaggtaatattctatttagtccattttagttttagatgaaagacatgtggcaaaattcaatttaagggttgagattta 17737075  T
Q  207 tttaattaaaata 219  Q
    |||||| ||||||    
T  17737076 tttaataaaaata 17737088  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 33076265 - 33076220
Alignment:
Q  110 agttcaggtacgctccatttaggtaatgcttcatttagttcattta 155  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  33076265 agttcaggtatgctccatttaggcaatgcttcatttagttcattta 33076220  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 7656071 - 7656117
Alignment:
Q  137 gcttcatttagttcatttaaactttggatggaagacacatgacaaaa 183  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  7656071 gcttcatttagttcatttagtctttggatgtaagccacatgacaaaa 7656117  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 9135088 - 9135044
Alignment:
Q  111 gttcaggtacgctccatttaggtaatgcttcatttagttcattta 155  Q
    ||||||||||||||||||||| |||||||  ||||||| ||||||    
T  9135088 gttcaggtacgctccatttagctaatgctcaatttagtccattta 9135044  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 43450219 - 43450122
Alignment:
Q  109 gagttcaggtacgctccatttaggtaatgcttcatttagttcatttaaactttggatggaagacacatgacaaaattaaatataaaggttgagattta 206  Q
    ||||||||||| ||||||||||  ||||||| |||||||| |||||| | |||||||||| ||||  || |||||| || | |||||| |||||||||    
T  43450219 gagttcaggtatgctccatttacctaatgctccatttagtccatttatattttggatggaggacatgtggcaaaataaagtttaaaggctgagattta 43450122  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 32160311 - 32160420
Alignment:
Q  109 gagttcaggtacgctccatttaggtaatgcttcatttagttcatttaaactttggatggaagacacatgacaaaattaaatataaaggttgagatttatt 208  Q
    ||||||||||| ||| |||||| |||  ||  |||||||| ||||||  |||| |||| ||||||  || ||| ||||| | ||| ||||||||||||||    
T  32160311 gagttcaggtatgcttcatttatgtatagccccatttagtccatttaggctttagatgaaagacatgtggcaagattaattttaagggttgagatttatt 32160410  T
Q  209 taattaaaat 218  Q
    |||| |||||    
T  32160411 taataaaaat 32160420  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 32161095 - 32160987
Alignment:
Q  109 gagttcaggtacgctccatttaggtaatgcttcatttagttcatttaaactttggatggaagacacatgacaaaattaaatataaaggttgagatttatt 208  Q
    ||||| ||||| |||||||||| |||  |||  ||||||| |||||||  ||| ||| |||||||  || ||| ||||| | ||| ||||||||||||||    
T  32161095 gagtttaggtatgctccatttatgtatagctctatttagtccatttaagttttagatagaagacatgtggcaagattaattttaagggttgagatttatt 32160996  T
Q  209 taattaaaa 217  Q
    |||| ||||    
T  32160995 taataaaaa 32160987  T

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