View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_111 (Length: 292)
Name: NF10201A_low_111
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_111 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 29104378 - 29104100
Alignment:
| Q |
9 |
agaaatcaaagccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaat |
108 |
Q |
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| T |
29104378 |
agaaatcaaagccggagaagatttttcgcttgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaac |
29104279 |
T |
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| Q |
109 |
agcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattct |
208 |
Q |
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| T |
29104278 |
agcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattct |
29104179 |
T |
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| Q |
209 |
tccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagatt |
287 |
Q |
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| T |
29104178 |
tccaaatcagcggcaaatttcggcggagttcattccctgacagaggaaacaatgcagtatctcattactcttgcagatt |
29104100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 29090106 - 29089856
Alignment:
| Q |
20 |
ccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaatagcagtcgtta |
119 |
Q |
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|||||||||||||| || |||||||||||||| || ||||||||| ||||||| |||||| ||||||| |||||||| || ||||||| | | |||| |
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| T |
29090106 |
ccggagaagattttccgtttgcttgatatgtatgccacaatcaccatgttgttaccggaggttgaatcgattttctctttcaattcaacctctggtgtta |
29090007 |
T |
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| Q |
120 |
aatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagc |
219 |
Q |
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| T |
29090006 |
aatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatattttctcagaattcgagtccgcaatcctgaaggactcttccaaatcgct |
29089907 |
T |
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| Q |
220 |
ggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatct |
270 |
Q |
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||| ||||||||||| |||||||||| |||| | |||||||||| ||||| |
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| T |
29089906 |
ggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatct |
29089856 |
T |
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