View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_116 (Length: 288)
Name: NF10201A_low_116
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_116 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 141 - 288
Target Start/End: Complemental strand, 31114667 - 31114519
Alignment:
| Q |
141 |
gtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagataatggagagtgagtggcataatgggatc |
240 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31114667 |
gtccatgaatcgaccaaagtgaacccagttcactgtgtttctgggatacaagcttctatcatcaatgcagataatggagagtgagtggcataatgggacc |
31114568 |
T |
|
| Q |
241 |
cacctctttgaatggacattggttct-aaagcttatttgattgggagaa |
288 |
Q |
| |
|
|| ||||| ||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31114567 |
caactcttagaaaggacattggttctaaaagcttatttgattgggagaa |
31114519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 31114739 - 31114681
Alignment:
| Q |
15 |
atggacatcaaccaaggatagataaagatgacgtcgttttgatgcttcaacccatttat |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31114739 |
atggacatcaaccaaggatagataaagatgacgtcgttttgatgcttcaacccatttat |
31114681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 31088611 - 31088499
Alignment:
| Q |
114 |
ttgagagtgggggttgaacataattgcgtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagata |
213 |
Q |
| |
|
||||||||| |||||||||||||||| |||| ||||| | |||||||||||| ||| |||||||| | |||| |||||| ||||||||| || || | |
|
|
| T |
31088611 |
ttgagagtgtgggttgaacataattgtatccacgaatcaacgaaagtgaacccacttctctgtgtttctttgatagaagcttatatcatcaaagcggaca |
31088512 |
T |
|
| Q |
214 |
atggagagtgagt |
226 |
Q |
| |
|
| |||||||||| |
|
|
| T |
31088511 |
acagagagtgagt |
31088499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University