View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_121 (Length: 283)
Name: NF10201A_low_121
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_121 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 25989464 - 25989739
Alignment:
| Q |
8 |
caacgaaatcacctagaaaattcaaaagcaacacaccaaaccacaaaatcaatcaattgtttattaccgaagaatcactgtgattgcttggtacaaagac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25989464 |
caacgaaatcacctagaaaattcaaaagcaacacaccaaaccacaaaatcaatcaattgtttattaccgaagaatcactgtgattgctcggtacaaagac |
25989563 |
T |
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| Q |
108 |
aatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttcttgaacctatagagtttcaaggaaatactaggatcaatc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25989564 |
aatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttcttgaacctatagagtttaaaggaaatactaggatcaatc |
25989663 |
T |
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| Q |
208 |
ttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgatttggttgttgattttga |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25989664 |
ttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgatttggctgttgattttga |
25989739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 63 - 283
Target Start/End: Original strand, 25322164 - 25322384
Alignment:
| Q |
63 |
attgtttattaccgaagaatcactgtgattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaa |
162 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25322164 |
attgtttattaccgaagaatcactgcgattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaa |
25322263 |
T |
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| Q |
163 |
catttcttgaacctatagagtttcaaggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaa |
262 |
Q |
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| ||||||| ||| || |||||| |||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25322264 |
cttttcttggaccgattgagtttaaaggaaatactaagatcaaacttggacgtcaacaacttgacgagtattttgaagagaggcgtcttgggattcacaa |
25322363 |
T |
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| Q |
263 |
tgatttggttgttgattttga |
283 |
Q |
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|||||||| |||||||||||| |
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| T |
25322364 |
tgatttggctgttgattttga |
25322384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 63 - 283
Target Start/End: Original strand, 26151857 - 26152077
Alignment:
| Q |
63 |
attgtttattaccgaagaatcactgtgattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaa |
162 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26151857 |
attgtttattaccgaagaatcactgcgattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaa |
26151956 |
T |
|
| Q |
163 |
catttcttgaacctatagagtttcaaggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaa |
262 |
Q |
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| T |
26151957 |
cttttcttggaccgattgagtttaaaggaaatactaagatcaaacttggacgtcaacaacttgacgagtattttgaagagaggcgtcttgggattcacaa |
26152056 |
T |
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| Q |
263 |
tgatttggttgttgattttga |
283 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
26152057 |
tgatttggctgttgattttga |
26152077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 69 - 283
Target Start/End: Complemental strand, 25324817 - 25324603
Alignment:
| Q |
69 |
tattaccgaagaatcactgtgattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttc |
168 |
Q |
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||||||||||||||||| | |||| ||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25324817 |
tattaccgaagaatcaccgcgatttcttggtacaaagataattattttggttatgtgagtttgacaccgtttgatcaaggacacaagaatacaacatttt |
25324718 |
T |
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| Q |
169 |
ttgaacctatagagtttcaaggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgattt |
268 |
Q |
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||| ||||||||||||| |||| ||||||| ||||||||| |||||| || ||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
25324717 |
ttggacctatagagtttaaagggaatactaagatcaatctaggacgtaaacaacttgacgagtattttgaagagagaagtctcgggattcacaatgattt |
25324618 |
T |
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| Q |
269 |
ggttgttgattttga |
283 |
Q |
| |
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|| |||||||||||| |
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| T |
25324617 |
ggctgttgattttga |
25324603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 69 - 283
Target Start/End: Complemental strand, 26154510 - 26154296
Alignment:
| Q |
69 |
tattaccgaagaatcactgtgattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttc |
168 |
Q |
| |
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||||||||||||||||| | |||| ||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26154510 |
tattaccgaagaatcaccgcgatttcttggtacaaagataattattttggttatgtgagtttgacaccgtttgatcaaggacacaagaatacaacatttt |
26154411 |
T |
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| Q |
169 |
ttgaacctatagagtttcaaggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgattt |
268 |
Q |
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||| ||||||||||||| |||| ||||||| ||||||||| |||||| || ||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
26154410 |
ttggacctatagagtttaaagggaatactaagatcaatctaggacgtaaacaacttgacgagtattttgaagagagaagtctcgggattcacaatgattt |
26154311 |
T |
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| Q |
269 |
ggttgttgattttga |
283 |
Q |
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|| |||||||||||| |
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| T |
26154310 |
ggctgttgattttga |
26154296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 69 - 283
Target Start/End: Original strand, 25434637 - 25434851
Alignment:
| Q |
69 |
tattaccgaagaatcactgtgattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttc |
168 |
Q |
| |
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||||| |||||||||| | ||||||||||||||||||||||| ||| ||| || | | ||||||||| || |||||||||||||||||||| || |||| |
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| T |
25434637 |
tattatcgaagaatcaaggcgattgcttggtacaaagacaatgatttcagtcatataactttgacaccctttgatcaaggacacaagaataccacttttc |
25434736 |
T |
|
| Q |
169 |
ttgaacctatagagtttcaaggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgattt |
268 |
Q |
| |
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||| ||||||||| ||| |||||||| || ||||| |||||||||||| ||||| ||||||||| |||||||| ||||||| ||||| | || ||||| |
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| T |
25434737 |
ttggacctatagaatttaaaggaaatgctttcatcaaacttggacgtcaacaacttaacgagtattctgaagagacgcgtcttaggatttataaagattt |
25434836 |
T |
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| Q |
269 |
ggttgttgattttga |
283 |
Q |
| |
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|| |||||||||||| |
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| T |
25434837 |
ggctgttgattttga |
25434851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 69 - 283
Target Start/End: Original strand, 25442545 - 25442759
Alignment:
| Q |
69 |
tattaccgaagaatcactgtgattgcttggtacaaagacaatggttttagttatgtgagtttgacaccgttcgatcaaggacacaagaatacaacatttc |
168 |
Q |
| |
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||||| ||||||||||| | |||||| |||||||||||||||| ||| ||| || ||||||| | || || |||||||||||||||||||| || |||| |
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| T |
25442545 |
tattatcgaagaatcaccgcgattgcctggtacaaagacaatgatttcagtcgtgcgagtttgtctccctttgatcaaggacacaagaataccacttttc |
25442644 |
T |
|
| Q |
169 |
ttgaacctatagagtttcaaggaaatactaggatcaatcttggacgtcaagaacttgacgagtattttgaagagaggcgtcttgggattcacaatgattt |
268 |
Q |
| |
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||| |||| |||| ||| |||||||| ||| ||||| |||||||||||| ||||| ||||||||| |||||||| ||||||||||||| | || ||||| |
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| T |
25442645 |
ttggacctgtagaatttaaaggaaatgctaccatcaaacttggacgtcaacaacttaacgagtattctgaagagacgcgtcttgggatttataacgattt |
25442744 |
T |
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| Q |
269 |
ggttgttgattttga |
283 |
Q |
| |
|
|| |||||||||||| |
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| T |
25442745 |
ggctgttgattttga |
25442759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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