View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_122 (Length: 283)

Name: NF10201A_low_122
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_122
NF10201A_low_122
[»] scaffold0288 (1 HSPs)
scaffold0288 (21-279)||(3646-3904)
[»] chr5 (2 HSPs)
chr5 (21-224)||(24103001-24103204)
chr5 (48-223)||(28000053-28000228)
[»] chr6 (32 HSPs)
chr6 (21-223)||(4480696-4480898)
chr6 (21-224)||(4267093-4267296)
chr6 (21-220)||(4469809-4470008)
chr6 (48-220)||(4585642-4585814)
chr6 (48-223)||(4613672-4613847)
chr6 (21-223)||(4601792-4601994)
chr6 (21-224)||(4299673-4299870)
chr6 (48-220)||(4592237-4592409)
chr6 (21-224)||(4256539-4256742)
chr6 (48-223)||(4516324-4516499)
chr6 (21-223)||(4461126-4461328)
chr6 (54-220)||(4504357-4504523)
chr6 (21-223)||(4617025-4617227)
chr6 (21-220)||(4570978-4571177)
chr6 (21-268)||(4625909-4626156)
chr6 (26-223)||(4579435-4579632)
chr6 (48-224)||(3171743-3171919)
chr6 (48-220)||(4490309-4490481)
chr6 (21-223)||(4515048-4515250)
chr6 (21-223)||(4563714-4563916)
chr6 (22-207)||(4568072-4568260)
chr6 (22-223)||(4505860-4506061)
chr6 (48-223)||(4557128-4557303)
chr6 (21-224)||(4622144-4622347)
chr6 (22-223)||(4492958-4493159)
chr6 (35-223)||(4560509-4560697)
chr6 (21-223)||(4574311-4574513)
chr6 (21-224)||(4260081-4260284)
chr6 (48-222)||(4598175-4598349)
chr6 (35-105)||(4457715-4457785)
chr6 (120-222)||(4392052-4392154)
chr6 (161-223)||(4606958-4607020)
[»] chr7 (1 HSPs)
chr7 (21-229)||(3086417-3086625)
[»] chr8 (3 HSPs)
chr8 (48-223)||(1674229-1674404)
chr8 (48-223)||(20863797-20863972)
chr8 (48-223)||(16686221-16686396)
[»] scaffold0477 (1 HSPs)
scaffold0477 (78-225)||(4670-4817)
[»] chr3 (1 HSPs)
chr3 (35-223)||(1281117-1281305)


Alignment Details
Target: scaffold0288 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 3646 - 3904
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3646 gggagattggacttgaaatcgatatggatgtgaagagagatgaggtggagaagctagtcaatgaattgacggtgggagagaaaggaaagaagatgaggca 3745  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3746 aaaggccgtggagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 3845  T
Q  221 caatgttaacttaaaatgtggttgtgtattcatcgatatcctcttgatattgttcgaca 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  3846 caatgttaacttaaaatgtggttgtgtattcatcgatatcctcttgattttgtttgaca 3904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 24103204 - 24103001
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||||| |||||||||| | |||||||||||||||| || |||||| |||||||||||||||||||||||||||| ||||||| ||||| |||    
T  24103204 gggagattggactcgaaatcgatacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaacggaaagacgatgaagca 24103105  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||||| | | ||||| || ||||||||||| |||||||| ||| | ||||||  ||||||||||||| ||||||||||||||||||||||  ||||||||    
T  24103104 aaaggtcttggagttcaagaagaaggcagaagagaacacaagatctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaa 24103005  T
Q  221 caat 224  Q
    ||||    
T  24103004 caat 24103001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 28000053 - 28000228
Alignment:
Q  48 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggc 147  Q
    ||||||||| ||| ||  ||||||||||  ||||||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| || || |||||    
T  28000053 atgtgaagatagaggatttggagaagcttatcaatgaattgatggtgggagagaatggaaaaaagatgaggcaaaaggccatggagttgaagaaaaaggc 28000152  T
Q  148 agaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 223  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| || ||| ||||||||    
T  28000153 agaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgtttaaacaa 28000228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 4480898 - 4480696
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||||| ||||||||||   ||||||||||||| || ||||||| | || ||||||||||| ||||||||||||||||||||||||||| |||    
T  4480898 gggagattggactcgaaatcgataccaatgtgaagagagaagatgtggagaggttaatcaatgaattgttggtgggagagaaaggaaagaagatgaagca 4480799  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||||||| | ||||| || |||| |||||||||| |||| ||||| |||||| |||||||||||||| |||||||||| ||||||||||| |||||||||    
T  4480798 aaaggccatggagttgaagaagatggcagaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttgcttaaa 4480699  T
Q  221 caa 223  Q
    |||    
T  4480698 caa 4480696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 4267093 - 4267296
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||||| |||||| ||| | |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| | ||||| |||    
T  4267093 gggagattggactcgaaatcaatacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagca 4267192  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||| | | | ||||| || | ||||||||| |||||||| ||||| ||||||  ||||||||||||| ||||||||||||||||||||||  ||||||||    
T  4267193 aaatgtcttggagttgaagaggaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaa 4267292  T
Q  221 caat 224  Q
    ||||    
T  4267293 caat 4267296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 4470008 - 4469809
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |    
T  4470008 gggagattggacttgaaatcgataaagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggttggagagaatggaaagaagatgaggga 4469909  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||||  | | ||||| || |||||||  |||||| | || ||||| || |||  |||||||| |||| |||||||||| |||||||| || |||||||||    
T  4469908 aaagatcatggagttcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaa 4469809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 4585814 - 4585642
Alignment:
Q  48 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggc 147  Q
    ||||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||| || ||||||||    
T  4585814 atgtgaagagagaggaggtggagaagttggtcaatgaattgatggtgggagagaatggaaagaagatgaggcaaaaggcaatcgagttgaagaagaaggc 4585715  T
Q  148 agaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
     |||||| |||| ||||| || ||| |||||||||| ||| |||| ||||| |||||||||||||||||||||    
T  4585714 ggaggaggacacgagacctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttgcttaaa 4585642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 4613672 - 4613847
Alignment:
Q  48 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggc 147  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||  | ||||| || ||||||||    
T  4613672 atgtgaagagagatgaggtagagaagctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggc 4613771  T
Q  148 agaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 223  Q
    ||||||| |||| |||||||| ||| ||||||| |||||| |||||||||| || || |||||  |||| ||||||    
T  4613772 agaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaa 4613847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 4601994 - 4601792
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||  | |||||||||| | ||||||||||||| ||| ||| ||||||  |||||||| |||| |  ||||| ||||| ||||||||||||||    
T  4601994 gggagattggtatggaaatcgatacaaatgtgaagagagaggagttggcgaagctgatcaatgaagtgatagccggagataaaggcaagaagatgaggca 4601895  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||||||| | ||||| || |||| |||| |||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  4601894 aaaggccatggagttgaagaagatggcaaaggagagcactagactaggtggttgttcatacaagaacctggacaaagttattaaggaggtgttgcttaaa 4601795  T
Q  221 caa 223  Q
    |||    
T  4601794 caa 4601792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 4299673 - 4299870
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||| | |||||||||| | |||||| |||||| |||||||| |||||  ||||||||||||||||||||||||||||| | |||||||| ||    
T  4299673 gggagattggaatcgaaatcgatacaaatgtgaggagagaggaggtggaaaagctgatcaatgaattgatggtgggagagaaaggagataagatgagaca 4299772  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||||||    |||||      ||||||||||||||||||||  ||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||||    
T  4299773 aaaggcaagggagtt------gaaggcagaggagaacactaatccaggtggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaa 4299866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 4592409 - 4592237
Alignment:
Q  48 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggc 147  Q
    |||| |||||||| ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||| || ||||||||    
T  4592409 atgtaaagagagaggaggtggagaaacttatcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggc 4592310  T
Q  148 agaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    |||||||||||| ||||| || ||| ||||||| |||||| |||||||| | || |||||||| |||||||||    
T  4592309 agaggagaacacgagacctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaa 4592237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 4256539 - 4256742
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||| |||||||| |||   ||||||||||||||||||||||||| ||  ||||||||||||||  |||||| ||||||||||||||||||||    
T  4256539 gggagattggaattgaaatcaatactaatgtgaagagagatgaggtggagaatctgatcaatgaattgatgtcgggagaaaaaggaaagaagatgaggca 4256638  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||||| | | || || || |||||| ||||| ||||||| || |||| ||||| |||||  |||||| ||||||||||||||||||||||  ||||||||    
T  4256639 aaaggtcatggaattgaagaagaagacagagaagaacaccagcccagctggtcattcattgatgaacttggacaaagttattaaggaggtcatgcttaaa 4256738  T
Q  221 caat 224  Q
    ||||    
T  4256739 caat 4256742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 4516499 - 4516324
Alignment:
Q  48 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggc 147  Q
    ||||||||||||| ||||||||||||||  |||||||||| ||||||||||| ||||||||||||||||||||||||||| | || || || ||||||||    
T  4516499 atgtgaagagagaggaggtggagaagctgatcaatgaattaatggtgggagataaaggaaagaagatgaggcaaaaggccatggaattgaagaagaaggc 4516400  T
Q  148 agaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 223  Q
    ||||||| |||| |||||||||||| |||||||  ||||| |||| ||||| |||||||||||  |||| ||||||    
T  4516399 agaggaggacacaagaccaggtggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctgctcaaacaa 4516324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 4461328 - 4461126
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||| | ||||| ||||||||||| |||||||  |||||||||||||||||    
T  4461328 gggagattggacttgaaatcgataaagatgtgaagagggatgaggtggagaagttggtcaacgaattgatggttggagagattggaaagaagatgaggca 4461229  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||||| | | || || || |||||||  |||||| | || ||||| || |||  |||||||| |||| |||||||||| |||||||| || |||||||||    
T  4461228 aaaggtcatggaattcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaa 4461129  T
Q  221 caa 223  Q
    |||    
T  4461128 caa 4461126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 54 - 220
Target Start/End: Original strand, 4504357 - 4504523
Alignment:
Q  54 agagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggcagagga 153  Q
    ||||||| ||||| ||||| ||  | |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||||||    
T  4504357 agagagaagaggtagagaaacttattaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagagga 4504456  T
Q  154 gaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    | |||| ||||  |||||| |||||||||||||| |||||||||| |||||||| || |||||||||    
T  4504457 ggacacaagacttggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttgcttaaa 4504523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 4617227 - 4617025
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||  | ||||||||||   ||||||||||||| ||| |||  |||||  |||||||| |||| |  ||||| ||||||||||| |||| |||    
T  4617227 gggagattggtatggaaatcgatacgaatgtgaagagagaggagttggcaaagctgatcaatgaagtgatagccggagataaaggaaagaaaatgaagca 4617128  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||||||| | ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| || |||||||||    
T  4617127 aaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttgaacaaagttattaaggatgtgttgcttaaa 4617028  T
Q  221 caa 223  Q
    |||    
T  4617027 caa 4617025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 4571177 - 4570978
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||| | ||||||||||   ||||||||||| |||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||| |    
T  4571177 gggagattggaatcgaaatcgatactaatgtgaagagaaatgaggtggagaatttggtcaatgaattgatggtgggagataaaggaaagaagatgaggaa 4571078  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    |||     | ||| | || |||||||| |||||| |||| ||||| |||||| |||||||||||||| |||| ||||| |||||||||||||||||||||    
T  4571077 aaatataatggagatgaagaagaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 4570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 268
Target Start/End: Complemental strand, 4626156 - 4625909
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||| | |||||||||    |||||||||| || | ||| ||||| ||  |||||| ||||||||  ||||| || |||||||||||||||||    
T  4626156 gggagattggaatggaaatcgatgctaatgtgaagagggagggggtagagaaactgatcaatgcattgatggcaggagataacggaaagaagatgaggca 4626057  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||||||| | ||||| || ||||||||||||||||||| ||| || |||||| |||||||||||||  |||| ||| | ||||| || || |||||||||    
T  4626056 aaaggccatggagttgaagaagaaggcagaggagaacattagtcccggtggttgttcatacatgaatatggataaactgattaatgatgtcttgcttaaa 4625957  T
Q  221 caatgttaacttaaaatgtggttgtgtattcatcgatatcctcttgat 268  Q
    |||| |||  |||||||||||||||||||||||| ||  |||||||||    
T  4625956 caatattagattaaaatgtggttgtgtattcatcaatcccctcttgat 4625909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 4579632 - 4579435
Alignment:
Q  26 attggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaagg 125  Q
    |||||| |||||||||| |   ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  4579632 attggaattgaaatcgacactaatgtgaagagagaggaggtggagaagctggttaatgaattgatggtgggagagaaagcaaagaagatgaggcaaaagg 4579533  T
Q  126 ccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 223  Q
    |  | ||||| || |||||||  |||||| |||| ||||| || ||  |||||||||||||| |||| ||||| ||||||||||| || || ||||||    
T  4579532 caattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttactcaaacaa 4579435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 3171919 - 3171743
Alignment:
Q  48 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggc 147  Q
    |||| |||||||  ||||| ||||| ||  |||| |||||||||||||||||||||||||||||||||||||||| |||| | ||||| || ||||||||    
T  3171919 atgtaaagagaggggaggtagagaaactgatcaacgaattgatggtgggagagaaaggaaagaagatgaggcaaagggccatggagttgaagaagaaggc 3171820  T
Q  148 agaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaat 224  Q
    ||||||| | || |||   |||||| |||||||||||||| |||| ||||| ||||||||||| |||||||||||||    
T  3171819 agaggaggatacaagatttggtggttgttcatacatgaacttggataaagtgattaaggaggtcttgcttaaacaat 3171743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 4490309 - 4490481
Alignment:
Q  48 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggc 147  Q
    |||| |||||||| ||||| ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||    ||||| || ||||||||    
T  4490309 atgtaaagagagaagaggtagagaaactgatcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggcgacggagttgaagaagaaggc 4490408  T
Q  148 agaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    || |||| |||| ||||  |||||| |||||||||||||| |||||||||| |||||||| ||  ||||||||    
T  4490409 agcggaggacacgagactcggtggtagttcatacatgaacttggacaaagtgattaaggatgtcatgcttaaa 4490481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 4515048 - 4515250
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||  | ||||||||||   ||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| || |||||| |    
T  4515048 gggagattgggatcgaaatcgatatgaatgtgaagagagaggaggttgaaaagcttgtcaatgaattgatggtgggagagaaaggaaataaaatgaggaa 4515147  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    |||||   | ||||| |||||||||||||| ||| |||||||||  || ||   ||||||| ||||| |||||||||| || |||||||| |||||||||    
T  4515148 aaaggttatggagttgaaaaagaaggcagacgaggacactagacttggcgggtcttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaa 4515247  T
Q  221 caa 223  Q
    |||    
T  4515248 caa 4515250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 4563916 - 4563714
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||  | ||||||||||   |||| |||||||| ||||||||||| || |||||||||||||||   ||||||||||||||||||||| ||||    
T  4563916 gggagattgggatggaaatcgatacgaatgtaaagagagaagaggtggagaaacttgtcaatgaattgatgtcaggagagaaaggaaagaagatgcggca 4563817  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||||||  | ||||| || ||||| |  ||||| ||||| ||| | || ||| |||||||||||||| |||||||||| || ||||||||||||||||||    
T  4563816 aaaggcaattgagttgaagaagaaagtggaggaaaacacgagagctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgcttaaa 4563717  T
Q  221 caa 223  Q
    |||    
T  4563716 caa 4563714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 4568260 - 4568072
Alignment:
Q  22 ggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaa 121  Q
    |||||| ||| | ||||| |||| | ||||||||||||| ||||||||||||||  | |||||||| ||||||||| |||||||||| ||||||||||||    
T  4568260 ggagatcggaatcgaaattgatacaaatgtgaagagagaggaggtggagaagctgatgaatgaattaatggtgggacagaaaggaaaaaagatgaggcaa 4568161  T
Q  122 aaggccgtcgagtt---aaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaagga 207  Q
    |||||||| |||||    || |||||||||||| || |||| ||||| |||| |  ||||||||||||| |||||||||| ||||||||    
T  4568160 aaggccgtggagttgaagaagaagaaggcagagaaggacacaagacctggtgattcttcatacatgaacttggacaaagtgattaagga 4568072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 4506061 - 4505860
Alignment:
Q  22 ggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaa 121  Q
    |||||||||| | ||||| ||||   ||||||| |||||  | || |||||||| ||| ||||| | ||||| |||||||||||||| ||||||||| ||    
T  4506061 ggagattggaatcgaaattgatactaatgtgaatagagaaaatgtagagaagctggtcgatgaaattatggttggagagaaaggaaacaagatgaggaaa 4505962  T
Q  122 aaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaac 221  Q
    |||| | | ||||| ||||||| |||| ||||| | || ||||| |||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  4505961 aaggtcatggagttgaaaaagagggcaaaggaggatacaagacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaac 4505862  T
Q  222 aa 223  Q
    ||    
T  4505861 aa 4505860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 4557303 - 4557128
Alignment:
Q  48 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggc 147  Q
    ||||||||||||||||||| |||||  | |||||||||||||||| ||| |||||||||||||||||| || |||||    | ||| | || | ||||||    
T  4557303 atgtgaagagagatgaggtagagaatttggtcaatgaattgatggagggggagaaaggaaagaagatgtggaaaaagataattgagatgaagacgaaggc 4557204  T
Q  148 agaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 223  Q
     |||||| |||| ||||| |||||| |||||||||||||  |||| ||||| ||||||||||||||||||||||||    
T  4557203 ggaggaggacacgagacctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaa 4557128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 4622347 - 4622144
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||| | |||||| |||   ||||||| ||||| ||||||  ||| ||  ||||||||||||||  |||||| ||||||||||||||||| ||    
T  4622347 gggagattggaatcgaaatcaatactaatgtgaaaagagaggaggtgtcgaatctgatcaatgaattgatgtcgggagataaaggaaagaagatgagaca 4622248  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||||||| | ||||| ||  |||||||||| ||||  || || || |||||| |||||||||  ||| ||||||||||||||||||||||  ||||||||    
T  4622247 aaaggccatggagttgaaggagaaggcagatgagacgaccagccctggtggttgttcatacaacaacttggacaaagttattaaggaggtcatgcttaaa 4622148  T
Q  221 caat 224  Q
    ||||    
T  4622147 caat 4622144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 4493159 - 4492958
Alignment:
Q  22 ggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaa 121  Q
    |||||||||| | |||||||||||  |||| || |||||  | |||||||| || ||||||||  | ||||| |||||||||||||| |||||||||  |    
T  4493159 ggagattggagtagaaatcgataggaatgttaatagagaaaatgtggagaatctggtcaatgagattatggttggagagaaaggaaacaagatgaggaga 4493060  T
Q  122 aaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaac 221  Q
    || |||   ||||| |||||||||||||||||| ||||   ||| |||||| |||||||||||||| |||||||||| || ||||| || ||||||||||    
T  4493059 aaagccacggagttgaaaaagaaggcagaggaggacacagtacctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaac 4492960  T
Q  222 aa 223  Q
    ||    
T  4492959 aa 4492958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 4560697 - 4560509
Alignment:
Q  35 gaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagt 134  Q
    ||||| |||| | |||| ||||| || || |||||||| || |||||||||||||||    |||| ||||||||||||||||||||||||||| | |||     
T  4560697 gaaattgatacaaatgtaaagagggaggacgtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaagatgaggcaaaaggccatggagc 4560598  T
Q  135 taaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 223  Q
    | || || ||||| |||| | |||| ||||| || ||| |||||||||||||| |||| ||||| ||||||||||| ||||||||||||    
T  4560597 tgaagaaaaaggcggaggtgtacacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaa 4560509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 4574513 - 4574311
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    |||||||||||   ||||||||||   |||| ||||| || ||||||||||| || |||||||||||||||   ||||| ||||||||||||||||||||    
T  4574513 gggagattggaaaggaaatcgatactaatgtaaagagggaggaggtggagaaactggtcaatgaattgatgtccggagataaaggaaagaagatgaggca 4574414  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||| ||| | ||| | || |||||||  |||| | |||| ||||| || ||| |||||||||  ||| |||| ||||| ||||||||||| |||||||||    
T  4574413 aaaagccattgagctgaagaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggagaaagtgattaaggaggtgttgcttaaa 4574314  T
Q  221 caa 223  Q
    |||    
T  4574313 caa 4574311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 4260081 - 4260284
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||| |||||||  |||   ||||||| ||||||||||||| ||||||  |||||||| | |||   |||||  |||||||||||||||||||    
T  4260081 gggagattggaattgaaattaatactaatgtgaaaagagatgaggtggcgaagctgatcaatgaaattatgtcaggagaagaaggaaagaagatgaggca 4260180  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||||| | | ||||| || | |||||||||||||||||| || |||  ||||  |||||  |||||| ||||||||||||||||| ||||  |||| |||    
T  4260181 aaaggtcatggagttgaagaggaaggcagaggagaacaccagtccatctggttattcattgatgaacttggacaaagttattaagcaggtcatgctcaaa 4260280  T
Q  221 caat 224  Q
    ||||    
T  4260281 caat 4260284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 4598349 - 4598175
Alignment:
Q  48 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggc 147  Q
    ||||||||||||| |||||||||||||| ||||| |||||||||  |||||| ||||||||||| |||||||||||| |  | || || || | ||||||    
T  4598349 atgtgaagagagaggaggtggagaagctggtcaacgaattgatgtcgggagataaaggaaagaaaatgaggcaaaagacaattgatttgaagatgaaggc 4598250  T
Q  148 agaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaaca 222  Q
     |||||| | || ||||  || ||| |||||||||||||| | || ||||| ||||||||||| || ||||||||    
T  4598249 ggaggaggaaacgagacttggaggttgttcatacatgaacttagagaaagtgattaaggaggtgtttcttaaaca 4598175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 4457785 - 4457715
Alignment:
Q  35 gaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaagg 105  Q
    |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  4457785 gaaatcgatacaaatgtgaagagagatgaggtggagaagttagtcaatgaattgatggtgggagaaaaagg 4457715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 4392052 - 4392154
Alignment:
Q  120 aaaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaa 219  Q
    |||||||  ||||||| || ||||||||| ||||| ||||  |||| ||||||  ||||| ||||||| |||||||| | ||||||||||| ||||||||    
T  4392052 aaaaggcgatcgagttgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaa 4392151  T
Q  220 aca 222  Q
    |||    
T  4392152 aca 4392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 4606958 - 4607020
Alignment:
Q  161 agaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 223  Q
    ||||||||||||  ||||||||||||| |||| ||||| |||||| |||||||||||||||||    
T  4606958 agaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaa 4607020  T

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Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 3086625 - 3086417
Alignment:
Q  21 gggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggca 120  Q
    ||||||||||| ||||||||||||   ||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  3086625 gggagattggaattgaaatcgatactaatgtgaagagagaggaggtcgagaagctgatcaatgaattgatggtgggagataaaggaaagaagatgaggca 3086526  T
Q  121 aaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 220  Q
    ||| | ||  |||||||| ||||| ||||| |||||||| ||    |||||| |||||||||||||| |||||||||||||||||||||| |||||||||    
T  3086525 aaatgtcgcagagttaaagaagaaagcagaagagaacaccagtatcggtggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaa 3086426  T
Q  221 caatgttaa 229  Q
     ||| ||||    
T  3086425 aaatattaa 3086417  T

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Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 1674404 - 1674229
Alignment:
Q  48 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggc 147  Q
    ||||||||||||| |   ||||||||||  ||||||||||||||||||||||||| ||||| |||||||||||||||||| | || || || ||||||||    
T  1674404 atgtgaagagagagggtttggagaagcttatcaatgaattgatggtgggagagaatggaaaaaagatgaggcaaaaggccatggaattgaagaagaaggc 1674305  T
Q  148 agaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 223  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| || ||||||||||||    
T  1674304 agaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgcttaaacaa 1674229  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 20863797 - 20863972
Alignment:
Q  48 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggc 147  Q
    |||| |||||||| |||||||||| ||| || |||||||||||||||||||||||||||| || ||||||||||||| |    ||||| || ||||||||    
T  20863797 atgtcaagagagaggaggtggagatgctggtaaatgaattgatggtgggagagaaaggaaggaggatgaggcaaaagacaaatgagttgaagaagaaggc 20863896  T
Q  148 agaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 223  Q
    ||||||| |||| ||||| |  ||| ||||||| |||||| |||||||||| ||||||||||| ||||||||||||    
T  20863897 agaggaggacacaagaccggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaa 20863972  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 16686221 - 16686396
Alignment:
Q  48 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggc 147  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||| |||||    | ||  |  ||| |||||     
T  16686221 atgtgaagagagatgaggtggagaaattggtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaagataattgaactgcaaatgaaggt 16686320  T
Q  148 agaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 223  Q
     || ||  || | ||||| |||||| |||||||||||||| |||| ||||| |||| |||||||||||||||||||    
T  16686321 ggacgaagacccgagacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaa 16686396  T

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Target: scaffold0477 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 225
Target Start/End: Original strand, 4670 - 4817
Alignment:
Q  78 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagttaaaaaagaaggcagaggagaacactagaccaggtggtcgttc 177  Q
    ||||||||||||||  |||||| ||||||| ||||||||||||||||||| | ||||| || |||||||||||||||||||| ||  | |||||  ||||    
T  4670 tcaatgaattgatgtcgggagataaaggaatgaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctgttc 4769  T
Q  178 atacatgaacctggacaaagttattaaggaggttttgcttaaacaatg 225  Q
    |||||||||| |||||||||| |||||||||||  |||||||||||||    
T  4770 atacatgaacttggacaaagtgattaaggaggtcatgcttaaacaatg 4817  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 1281305 - 1281117
Alignment:
Q  35 gaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccgtcgagt 134  Q
    |||||||||| | ||||||||||||| |||||||  ||| |  ||||||||||||| |  || ||  |||||||||| |||||  |||||||| | || |    
T  1281305 gaaatcgatacaaatgtgaagagagaggaggtggctaagttgatcaatgaattgatagccggggatgaaggaaagaatatgagagaaaaggccatggaat 1281206  T
Q  135 taaaaaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 223  Q
    | || |||  ||| ||||||||||||||||| |||||| |||||||||||||| | |||||||| ||||||||  | ||||||||||||    
T  1281205 tgaagaaggcggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaa 1281117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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