View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_124 (Length: 281)
Name: NF10201A_low_124
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_124 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 5852603 - 5852867
Alignment:
| Q |
13 |
aatatcttatatatttatatattagtagaaaaatcgggtcaaagcatggtatgtgatggtgaacagtacacattttcaatataggacatttaaaatgata |
112 |
Q |
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| T |
5852603 |
aatatcttatatctttatatattagtagaaaaatcgggtcaaagcatggtatgtgattgtgaacagtacacattttcaatatgggtcatttaaaatgaca |
5852702 |
T |
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| Q |
113 |
tggagtgagtaatttcctttctctaaactgatattttgaatcaattaagtctatgcttcttgacatttatatatttgacagcattcctttttccatcatc |
212 |
Q |
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| T |
5852703 |
ttgagtgagtgattttctttctctaaattgatattttgaatcaattaag--tatgcttcttgacattcacatatttggcagcattcccttttccatcatc |
5852800 |
T |
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| Q |
213 |
catgttacacgcaaagctagaagtcttggtcaacatgacaagtttttaggttgattagactagtttatg |
281 |
Q |
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| T |
5852801 |
catgttacacggaaagctagaagtcttggtcaacatgccaa--ctttaagttgagtagactagattatg |
5852867 |
T |
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