View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_125 (Length: 281)
Name: NF10201A_low_125
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_125 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 3698957 - 3698685
Alignment:
| Q |
11 |
taattctactgttactattctcttcattg----taacaaccatatttcaaactatagcaaactaacaaggataatgagttatttaccc-ttggtgtccat |
105 |
Q |
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| T |
3698957 |
taattctactgttactattctcttcattgctggtaacaaccgtattgtaaactatagcaaactaacaaggataatgagttatttaccccttggtgtccat |
3698858 |
T |
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| Q |
106 |
ctcaataaggttcatgttctgcagctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgactt |
205 |
Q |
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| T |
3698857 |
ctcaataaggttcatgttctgcaactgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgactt |
3698758 |
T |
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| Q |
206 |
ccaccataaatcctctggaatgcaccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctg |
278 |
Q |
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| T |
3698757 |
ccaccataaatcctctggaatgcaccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctg |
3698685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 130 - 278
Target Start/End: Complemental strand, 3703777 - 3703629
Alignment:
| Q |
130 |
ctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgacttccaccataaatcctctggaatgca |
229 |
Q |
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| T |
3703777 |
ctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctggcttccaccataaatcctctggaatgca |
3703678 |
T |
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| Q |
230 |
ccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctg |
278 |
Q |
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| T |
3703677 |
ccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctg |
3703629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 3706928 - 3706871
Alignment:
| Q |
98 |
gtgtccatctcaataaggttcatgttctgcagctgttgaagaatgtggcgagcaatgg |
155 |
Q |
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| T |
3706928 |
gtgtccatttcaatgatgtccatgttctgcaactgttggagaatgtgacgagcaatgg |
3706871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 92 - 279
Target Start/End: Original strand, 15179381 - 15179568
Alignment:
| Q |
92 |
cccttggtgtccatctcaataaggttcatgttctgcagctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgc |
191 |
Q |
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| T |
15179381 |
cccttggtatccatctcgatgaggttcatgttctccaactgttgaagaatgtgacgagcaatagcaccactgctcttgcagaaatggggaggacgacttc |
15179480 |
T |
|
| Q |
192 |
cattcctctgacttccaccataaatcctctggaatgcaccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctga |
279 |
Q |
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| T |
15179481 |
cattcctctgactcccaccgtaaatcctctggaatgaaccaacaccaagaccgcctcttacgtagattttccttgccatggaagctga |
15179568 |
T |
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