View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_126 (Length: 280)
Name: NF10201A_low_126
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_126 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 37704701 - 37704454
Alignment:
| Q |
14 |
aaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaat |
113 |
Q |
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| T |
37704701 |
aaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaat |
37704602 |
T |
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| Q |
114 |
gaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataaggga |
213 |
Q |
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| T |
37704601 |
gaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataaggga |
37704502 |
T |
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| Q |
214 |
atacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
261 |
Q |
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| T |
37704501 |
atacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
37704454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 37699226 - 37698974
Alignment:
| Q |
14 |
aaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtt |
109 |
Q |
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| T |
37699226 |
aaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttggttttccaagatgttatttagtt |
37699127 |
T |
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| Q |
110 |
taatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataa |
209 |
Q |
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| T |
37699126 |
taatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatgaaaagcacccccaacacaaaataa |
37699027 |
T |
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| Q |
210 |
gggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
260 |
Q |
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| T |
37699026 |
gggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 37437766 - 37437520
Alignment:
| Q |
14 |
aaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtt |
109 |
Q |
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| T |
37437766 |
aaatgaatttgttatcttattatcacaacttgcaataagattccaactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagtt |
37437671 |
T |
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| Q |
110 |
taatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataa |
209 |
Q |
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| T |
37437670 |
taatgaacaccaaacttttctatgattgttattgaattaatattgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaa |
37437572 |
T |
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| Q |
210 |
gggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
261 |
Q |
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| T |
37437571 |
gggaatagctagactgaatttgtaaacaatctaataagtcagactttttggt |
37437520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 37698863 - 37698636
Alignment:
| Q |
14 |
aaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttagt |
108 |
Q |
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| T |
37698863 |
aaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttagt |
37698764 |
T |
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| Q |
109 |
ttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaata |
208 |
Q |
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| T |
37698763 |
ttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaata |
37698689 |
T |
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| Q |
209 |
agggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
261 |
Q |
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| T |
37698688 |
agggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 16841007 - 16841109
Alignment:
| Q |
31 |
tatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttc |
129 |
Q |
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| T |
16841007 |
tatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttg |
16841105 |
T |
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| Q |
130 |
tatg |
133 |
Q |
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|||| |
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| T |
16841106 |
tatg |
16841109 |
T |
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