View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_135 (Length: 274)
Name: NF10201A_low_135
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_135 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 29013500 - 29013767
Alignment:
| Q |
1 |
gaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataagcttcaacattcaatgcaagatcatgaaaatttggatcagagtt |
100 |
Q |
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| T |
29013500 |
gaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagagtt |
29013599 |
T |
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| Q |
101 |
atcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggaccaacccaaccaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29013600 |
atcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaata |
29013699 |
T |
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| Q |
201 |
gcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013700 |
gcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
29013767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 29366188 - 29366455
Alignment:
| Q |
1 |
gaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataagcttcaacattcaatgcaagatcatgaaaatttggatcagagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366188 |
gaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagagtt |
29366287 |
T |
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| Q |
101 |
atcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggaccaacccaaccaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29366288 |
atcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaata |
29366387 |
T |
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| Q |
201 |
gcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
29366388 |
gcataccattgacgtttccatagtgaatgtgatgctcttactcctcgagctgatattaagcatatttc |
29366455 |
T |
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