View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_137 (Length: 272)
Name: NF10201A_low_137
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_137 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 55 - 260
Target Start/End: Original strand, 15439464 - 15439669
Alignment:
| Q |
55 |
ctagtttcaagcagaagaatgttctggctgaaagttctacaaggaaacttggggatagcactggtccaaaggttcgtggtttaaagggagaaaatgtgaa |
154 |
Q |
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| T |
15439464 |
ctagtttaaagcagaagaatgttctggctgaaagttctacaaggaaactttgggataacactggtccaaaggattgtggtttaaagggagaaaatgtgaa |
15439563 |
T |
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| Q |
155 |
aaatgaagctcccattataaagcacaagaatgttccatctgaaaggtctaaaaggaaacttatggataacactggtgcaaaggatgatggttccaagcgt |
254 |
Q |
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| T |
15439564 |
aaatgaagctcctattttaaagcacaagaatgttccagctgaaaggtctaaacggaaacttatggataacactggtgcaaaggatgatggttccaagctt |
15439663 |
T |
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| Q |
255 |
gatatt |
260 |
Q |
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|||||| |
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| T |
15439664 |
gatatt |
15439669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 15439379 - 15439448
Alignment:
| Q |
72 |
aatgttctggctgaaagttctacaaggaaacttggggatagcactggtccaaaggttcgtggtttaaagg |
141 |
Q |
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| T |
15439379 |
aatgttctggctgaaagttctaaaaggaaacttggggataacactggtccaaaggatcgtggtttcaagg |
15439448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 15439338 - 15439379
Alignment:
| Q |
55 |
ctagtttcaagcagaagaatgttctggctgaaagttctacaa |
96 |
Q |
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| T |
15439338 |
ctagtttcaagcagaagaatgttctggctgaaagttctacaa |
15439379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 15439248 - 15439297
Alignment:
| Q |
7 |
acaaggaagttccagctgtaggttcaaaattgaaatctggggattatgct |
56 |
Q |
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| T |
15439248 |
acaaggaagttccagcggtagattctaaattgaaatctggggattatgct |
15439297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 15439389 - 15439435
Alignment:
| Q |
193 |
ctgaaaggtctaaaaggaaacttatggataacactggtgcaaaggat |
239 |
Q |
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| T |
15439389 |
ctgaaagttctaaaaggaaacttggggataacactggtccaaaggat |
15439435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 52418317 - 52418415
Alignment:
| Q |
148 |
atgtgaaaaatgaagctcccattataaagcacaagaatgttccatctgaaaggtctaaaaggaaacttatggataacactggtgcaaaggatgatggtt |
246 |
Q |
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|||| |||||||||||||| ||| | ||||||||| | ||| | ||||||||||||||||||||||| || |||||| | |||||||||||||||| |
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| T |
52418317 |
atgttaaaaatgaagctcctattttcaagcacaaggaagtttcggatgaaaggtctaaaaggaaacttagggcaaacacttgcgcaaaggatgatggtt |
52418415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 52418119 - 52418226
Alignment:
| Q |
58 |
gtttcaagcagaagaatgttctggctgaaagttctacaaggaaacttggggatagcactggtccaaaggttcgtggtttaaagggagaaaatgtgaaaaa |
157 |
Q |
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| T |
52418119 |
gtttcaagcagaagaaagtttcggctgaaaattctaaaaggaaacccgggtatcacactggtccaaaagatcatagtttcaaggtagataatgtg-aaaa |
52418217 |
T |
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| Q |
158 |
tgaagctcc |
166 |
Q |
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| T |
52418218 |
tgaagctcc |
52418226 |
T |
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