View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_140 (Length: 271)

Name: NF10201A_low_140
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_140
NF10201A_low_140
[»] chr8 (1 HSPs)
chr8 (7-259)||(38243750-38244002)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 38244002 - 38243750
Alignment:
Q  7 aaaccattactacgccaccgccgcagataccgcctttcgatcaccaacctcatccgtattatggaccatccgccgatgaagttttcgccaagcgtaaaca 106  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38244002 aaaccattactacgccaccgccgcagataccgccgttcgatcaccaacctcatccgtattatggaccatccgccgatgaagttttctccaagcgtaaaca 38243903  T
Q  107 gttccttggtccttccttgttccatttctatcaaaaacccgtcagttcctatcatcaaactcatttctcttctttaatttcatttattgtttgttacnnn 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  38243902 gttccttggtccttccttgttccatttctatcaaaaacccgtcagttcctatcatcaaactcatttctcttctttaatttcatttattgtttgttacttt 38243803  T
Q  207 nnnnnnatagaagaagaaattgatgatgaatgatgtttgtatagttgaatatt 259  Q
          |||||||||||||||||||||||||||||||| ||||||||||||||    
T  38243802 ttttttatagaagaagaaattgatgatgaatgatgtttttatagttgaatatt 38243750  T

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