View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_144 (Length: 269)
Name: NF10201A_low_144
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_144 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 45106637 - 45106875
Alignment:
| Q |
20 |
ctacggtgacaggatattctactatagggtcacatagatcaattacttcagtcataggagt-atgtggtgtggtttatgaatgcaaactagtatcttcag |
118 |
Q |
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| T |
45106637 |
ctacggtgacaggatattctactatagggtcacatagatcaattacttcagtcataggagttatgtggtgtggtttatgaatgcaaactagtatcttcag |
45106736 |
T |
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| Q |
119 |
ttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaaatgttttaccaacaagtgagtcgagcaa |
218 |
Q |
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| T |
45106737 |
ttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaaatgttttaccaacaagtgagtcgagcaa |
45106836 |
T |
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| Q |
219 |
attgaaaccatgattatgaatataaccacacaatatatt |
257 |
Q |
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| T |
45106837 |
attgaaaccatgattatgaatataaccacacaatatatt |
45106875 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 5623559 - 5623484
Alignment:
| Q |
115 |
tcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
190 |
Q |
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| T |
5623559 |
tcagttctgcgtcgggttttaaactcatgatgttccttttttggtagccggcatattttcttgatggatcatacaa |
5623484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 18602485 - 18602405
Alignment:
| Q |
110 |
tatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
190 |
Q |
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| T |
18602485 |
tatcttaagttctgagtttggtttcaagctcaagatgttacgcttttgataacctgcatatttccttgaagggtcatacaa |
18602405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 18630141 - 18630221
Alignment:
| Q |
110 |
tatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
190 |
Q |
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| T |
18630141 |
tatcttaagttctgagtttggtttcaagctcaagatgttacgcttttgataacctgcatatttccttgaagggtcatacaa |
18630221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 18642849 - 18642929
Alignment:
| Q |
110 |
tatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
190 |
Q |
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| T |
18642849 |
tatcttaagttctgagtttggtttcaagctcaagatgttacgcttttgataacctgcatatttccttgaagggtcatacaa |
18642929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 18525066 - 18524986
Alignment:
| Q |
110 |
tatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
190 |
Q |
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| T |
18525066 |
tatcttaagttctgagcttggtttcaagctcaagatgttacgcttttgataacctgcatatttccttgaagggtcatacaa |
18524986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 35298141 - 35298214
Alignment:
| Q |
117 |
agttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
190 |
Q |
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| T |
35298141 |
agttctgcgtcgggttttaaactcacgatgttccgtttctggtagccggcatattttcttgatggatcatacaa |
35298214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 38575669 - 38575596
Alignment:
| Q |
117 |
agttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
190 |
Q |
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| T |
38575669 |
agttctgagtttggtttcaagctcaagatgtttcgcttttgataacctgcatatttccttgaagggtcatacaa |
38575596 |
T |
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