View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_147 (Length: 267)
Name: NF10201A_low_147
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_147 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 32532552 - 32532673
Alignment:
| Q |
140 |
tatgcacacagataagatagtagtgatgtatgttagttccatccttacacaatattcaagcaacaattttcatcagggaattcatctttacataccaaaa |
239 |
Q |
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| T |
32532552 |
tatgcacacagataagatagtagtgatgtatgttagttccatccttacacgatattcaagcaacaattttcatcagggaattcatctatacataccaaaa |
32532651 |
T |
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| Q |
240 |
gcatttaatcgtatcacttctc |
261 |
Q |
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|||||||||||||||||||||| |
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| T |
32532652 |
gcatttaatcgtatcacttctc |
32532673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 32532451 - 32532551
Alignment:
| Q |
1 |
agcaaacctgacaacaggtgaaggaaaccaaaatgattgtaaatttagttctgccacattcatgaatgtgccacagtatggttggttggttttggatccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32532451 |
agcaaacctgacaacaggtgaaggaaaccaaaatgattgtaaattcagttctgccacattcatgaatgtgccacagtatgattggttggttttggatccc |
32532550 |
T |
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| Q |
101 |
t |
101 |
Q |
| |
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| |
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| T |
32532551 |
t |
32532551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 32520848 - 32520950
Alignment:
| Q |
110 |
aactttgaaagctaagaaatatctcaaatatatgcacacagataagatagtagtgatgtatgttagttccatccttacacaatattcaagcaacaatttt |
209 |
Q |
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|||||||||||||||| |||||| |||| ||||||||| |||||||| |||||| | |||||||||||||||||| | | |||| ||||||||||||||| |
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| T |
32520848 |
aactttgaaagctaagcaatatcccaaacatatgcacatagataagaaagtagtaaagtatgttagttccatcctcaaataatactcaagcaacaatttt |
32520947 |
T |
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| Q |
210 |
cat |
212 |
Q |
| |
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||| |
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| T |
32520948 |
cat |
32520950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 32547966 - 32548072
Alignment:
| Q |
57 |
cattcatgaatgtgccacagtatggttggttggttttggatccctaaacatccaactttgaaagctaagaaatatctcaaatatatgcacacagataaga |
156 |
Q |
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|||||| |||||| |||||||||| | ||||||||||| || |||| |||||||||| | ||||||||| ||||||| ||||| ||| || |||||||| |
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| T |
32547966 |
cattcaggaatgtaccacagtatgttcggttggttttgcattcctacacatccaactattaaagctaagcaatatcttaaatagatgtgcatagataaga |
32548065 |
T |
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| Q |
157 |
tagtagt |
163 |
Q |
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|||||| |
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| T |
32548066 |
aagtagt |
32548072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 23482674 - 23482751
Alignment:
| Q |
1 |
agcaaacctgacaacaggtgaaggaaaccaaaatgattgtaaatttagttctgccacattcatgaatgtgccacagta |
78 |
Q |
| |
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||||||||| ||||||| |||||||||||||||||| ||||| || |||| || ||||||||||||| |||||||||| |
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| T |
23482674 |
agcaaacctaacaacagctgaaggaaaccaaaatgactgtaacttcagttttgacacattcatgaatttgccacagta |
23482751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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