View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_152 (Length: 264)
Name: NF10201A_low_152
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_152 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 40586135 - 40586365
Alignment:
| Q |
15 |
aagaaaggttaagataccatttgttggaggtgttgtatatgga------gctggagcaggagctggaggtggagttggataaggagcaagtggaactggc |
108 |
Q |
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| T |
40586135 |
aagaaaggttaagataccatttgttggaggtgttgtatatggagctggagctggagcaggagctggaggtggagttggataaggagcaagtggaactggc |
40586234 |
T |
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| Q |
109 |
attataaaataactaagtcaaaagtattatttttctgtgccaaattctacaaacagaacaaagcacttccattcattttttcaactcctggaaaaggaag |
208 |
Q |
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| T |
40586235 |
attataaaagaactaagtcaaaagtattatttttctgtgccaaattctacaaacagaacaaagcacttccatccattttttcaactcctggaaaaggaag |
40586334 |
T |
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| Q |
209 |
aaatatagtaaaagattcattcaagagggag |
239 |
Q |
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| T |
40586335 |
aaatatagtaaaagattcattcaagagggag |
40586365 |
T |
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