View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_155 (Length: 262)
Name: NF10201A_low_155
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_155 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 18648553 - 18648797
Alignment:
| Q |
12 |
atgaagaaatattcaatctagaaatcaattgatacattgaggaagaagtaattgatcttaatcctaagtacaatgtatgtttcagggggagtacttgttc |
111 |
Q |
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| T |
18648553 |
atgaagaaatactcaatctagaaatcaattgatacattgaggaagaagtaattgatgttaatcctaagtacaatgtttgtttcagggagagtacttgttc |
18648652 |
T |
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| Q |
112 |
attggagcagggatatttacaattgtattttgcattattgagatggataaacctgatcaacctcatcactttgaacctcaaatatacaacatggaaagag |
211 |
Q |
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| T |
18648653 |
attggagcagggatatttacaattgtattttgcattattgagatggataaacctgatcaacctcatcactttgaacctcaaatatacaacatggaaagag |
18648752 |
T |
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| Q |
212 |
gagctagagacaagttgataaatgactataattccatgagcatat |
256 |
Q |
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| T |
18648753 |
gagctagagacaagttgataaatgactataattccatgagcatat |
18648797 |
T |
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