View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_157 (Length: 262)
Name: NF10201A_low_157
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_157 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 43921985 - 43922096
Alignment:
| Q |
90 |
tagaatcgataagatactagtggtgcaattacggattctagtgcgatcgatgataataagagaggtgaaatgagtaaaaaaggagatggaaattgaaacc |
189 |
Q |
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| T |
43921985 |
tagaatcgataagatactagtggtgcaattacggattctagtgcgatcgatgataataagagaggtgaaatgaataaaaaaggagatagaaattgaaacc |
43922084 |
T |
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| Q |
190 |
ttgattttcatc |
201 |
Q |
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|||||||||||| |
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| T |
43922085 |
ttgattttcatc |
43922096 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 43921898 - 43921937
Alignment:
| Q |
6 |
actgagatgaatcgataatcatgtacaagaatttcgtatt |
45 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |
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| T |
43921898 |
actgagataaatcgataatcatgtacaagaatttcgtatt |
43921937 |
T |
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