View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_158 (Length: 261)
Name: NF10201A_low_158
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_158 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 48693626 - 48693856
Alignment:
| Q |
10 |
tcagagacatattgaaatttggactagtacttcttgaaaagaattgatatcacaaagttgtgtagtatagaatagaagatattatggaaaaagagtgtgt |
109 |
Q |
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| T |
48693626 |
tcagagacatattgaaatttggactagtacttcttgaaaagaattgatatcacaaagttgtgtagtatagaatagaagatattatggaaaaagagtgtgt |
48693725 |
T |
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| Q |
110 |
tgaggatattatggaaattgaagtccttccttcaatgtggccagaagatattggagctgatgttggaaagcagttcaatatagaaaagccaggaaatgat |
209 |
Q |
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| T |
48693726 |
tgaggatattatggaaattgaagtccttccttcaatgtggccagaagatattggagctgatgttggaaagcagttcaatatagaaaagccaggaaatgat |
48693825 |
T |
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| Q |
210 |
caagatatgttagaagaagtatcaatcatag |
240 |
Q |
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| T |
48693826 |
caagatgtgttagaagaagtatcaatcatag |
48693856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 3457064 - 3456967
Alignment:
| Q |
139 |
cttcaatgtggccagaagatattggagctgatgttggaaagcagttcaatatagaaaagccaggaaatgatcaagatatgttagaagaagtatcaatc |
236 |
Q |
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| T |
3457064 |
cttcaatgtggccagaagatgttggaactgatgttggaaaacaattcaacatagaaaaaccaggaagagatcaagatatgttggaagaagtaacaatc |
3456967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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