View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_165 (Length: 257)
Name: NF10201A_low_165
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_165 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 9603888 - 9603763
Alignment:
| Q |
5 |
tacataatacactcatttatatgatactttacatcaaattgcccaagaaacagagtccattatccagtatcaagtgaggtgtaggaggatgacttactca |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9603888 |
tacataatacactcgtttatatgatactttacattaaattgtccaagaaacagagtccgttatccaatatcaagtgaggtgtaggaggatgacttactca |
9603789 |
T |
|
| Q |
105 |
agacttgcaaacggggggactcaata |
130 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
9603788 |
agacttgcaaacggggggactcaata |
9603763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 9603736 - 9603676
Alignment:
| Q |
156 |
acgcatcttgatgttttcatgttacattgatgtcttcatgttataattttgtatattggca |
216 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
9603736 |
acgcatcttgatgttttcctgtgacattggtgtcttcatgtcataattttgtatattggca |
9603676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 20770364 - 20770313
Alignment:
| Q |
163 |
ttgatgttttcatgttacattgatgtcttcatgttataattttgtatattgg |
214 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||||||||||||||||||| |
|
|
| T |
20770364 |
ttgatgttttcatgtgtcattgatgttttgatgttataattttgtatattgg |
20770313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 35779593 - 35779646
Alignment:
| Q |
160 |
atcttgatgttttcatgttacattgatgtcttcatgttataattttgtatattg |
213 |
Q |
| |
|
|||||||||||||||||| |||| ||||| || || | |||||||||||||||| |
|
|
| T |
35779593 |
atcttgatgttttcatgtgacatcgatgtttttatatcataattttgtatattg |
35779646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 35779511 - 35779555
Alignment:
| Q |
70 |
agtatcaagtgaggtgtaggaggatgacttactcaagacttgcaa |
114 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
35779511 |
agtatcaagtgaagtgtaggaggaggaactactcaagacttgcaa |
35779555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University