View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_172 (Length: 253)
Name: NF10201A_low_172
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_172 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 36724372 - 36724252
Alignment:
| Q |
1 |
tcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagttgca |
100 |
Q |
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| T |
36724372 |
tcagaccttcaatttgataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaagcatataagatagtagtgaatttagatgca |
36724273 |
T |
|
| Q |
101 |
ttatagatgcttgtagacagt |
121 |
Q |
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| T |
36724272 |
ttatagatgcttgtagacagt |
36724252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 36723895 - 36723764
Alignment:
| Q |
108 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||| | ||||||| ||||||||||||||||||| |
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| T |
36723895 |
tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc |
36723796 |
T |
|
| Q |
208 |
cacataatactaactcccacacctatgatgat |
239 |
Q |
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| T |
36723795 |
cacataatactagctctcacacctatgatgat |
36723764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 163
Target Start/End: Original strand, 712156 - 712314
Alignment:
| Q |
5 |
accttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagttgcattat |
104 |
Q |
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| T |
712156 |
accttcaatttgataatgtagattttgctctagactctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaatttggatgtattat |
712255 |
T |
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| Q |
105 |
agatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
163 |
Q |
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| T |
712256 |
acttgcatgtagatagttgtttcaaaatagattttaaaactctcatgttgagtttaata |
712314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 717366 - 717603
Alignment:
| Q |
5 |
accttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagttgcattat |
104 |
Q |
| |
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||||||||||||||||| |||||| ||||||||| | ||| | ||| |||||| |||||| | | || ||||| | |||||||| | || ||||| |
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| T |
717366 |
accttcaatttgataatgtagatttagctctagactctaagaaggttgttgatgcttttagaagatgtgtaggagatagtagtgaatttggatgtattat |
717465 |
T |
|
| Q |
105 |
agatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgctcatgagttagctcagata |
203 |
Q |
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| T |
717466 |
agttgaatgtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcacttacgagttagctcatata |
717565 |
T |
|
| Q |
204 |
gtcccacataatactaactcccacacctatgatgatgt |
241 |
Q |
| |
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| T |
717566 |
gccccacataatgctagatctctcacttatgatgatgt |
717603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 163
Target Start/End: Original strand, 14541090 - 14541248
Alignment:
| Q |
5 |
accttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagttgcattat |
104 |
Q |
| |
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||||||||||||||||| | ||||||||||||||| | ||| |||||||||| |||||||| || |||||||| || ||||||| || ||||| |
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| T |
14541090 |
accttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatatgtagaagataatagtaaatttagatgtattat |
14541189 |
T |
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| Q |
105 |
agatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
163 |
Q |
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| T |
14541190 |
agatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata |
14541248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 2087481 - 2087423
Alignment:
| Q |
91 |
tttagttgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctca |
149 |
Q |
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|||||||| |||||||||| ||| |||| || ||||| |||||||||||||||||||| |
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| T |
2087481 |
tttagttgtattatagatgtctgttgacacttgtttcaaagtagatttcaaaactctca |
2087423 |
T |
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