View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_177 (Length: 251)
Name: NF10201A_low_177
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_177 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 87358 - 87602
Alignment:
| Q |
6 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
105 |
Q |
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| T |
87358 |
actgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
87457 |
T |
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| Q |
106 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87458 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
87557 |
T |
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| Q |
206 |
tccatgtagagttgaagctataagatatatggctaatcatgagac |
250 |
Q |
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| T |
87558 |
tccatgtagagttgaagctataagatatatggctaatcatgagac |
87602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 95388 - 95618
Alignment:
| Q |
6 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
105 |
Q |
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| T |
95388 |
actgagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgc |
95473 |
T |
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| Q |
106 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
205 |
Q |
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| T |
95474 |
cagaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcat |
95573 |
T |
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| Q |
206 |
tccatgtagagttgaagctataagatatatggctaatcatgagac |
250 |
Q |
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| T |
95574 |
tccatgtagagttgaagatataagatatatggctaatcatgagac |
95618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 40878925 - 40878681
Alignment:
| Q |
6 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
105 |
Q |
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| T |
40878925 |
actgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
40878826 |
T |
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| Q |
106 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878825 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
40878726 |
T |
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| Q |
206 |
tccatgtagagttgaagctataagatatatggctaatcatgagac |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878725 |
tccatgtagagttgaagctataagatatatggctaatcatgagac |
40878681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 40870894 - 40870664
Alignment:
| Q |
6 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
105 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |
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| T |
40870894 |
actgagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgc |
40870809 |
T |
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| Q |
106 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
205 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| |
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| T |
40870808 |
cagaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcat |
40870709 |
T |
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| Q |
206 |
tccatgtagagttgaagctataagatatatggctaatcatgagac |
250 |
Q |
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| T |
40870708 |
tccatgtagagttgaagatataagatatatggctaatcatgagac |
40870664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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