View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_18 (Length: 428)
Name: NF10201A_low_18
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 33102508 - 33102087
Alignment:
| Q |
1 |
atgaacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102508 |
atgaacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaata |
33102409 |
T |
|
| Q |
101 |
atagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102408 |
atagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaa |
33102309 |
T |
|
| Q |
201 |
gaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102308 |
gaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagaga |
33102209 |
T |
|
| Q |
301 |
gaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102208 |
gaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcg |
33102109 |
T |
|
| Q |
401 |
atgaacctatagttcatggcat |
422 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
33102108 |
atgaacctatagttcatggcat |
33102087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 273
Target Start/End: Complemental strand, 52716731 - 52716522
Alignment:
| Q |
64 |
aagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaa |
163 |
Q |
| |
|
|||||||||||| ||||||||||| || || || | |||||||| |||||||||||||||||||| | || ||||| |||||| | | ||| ||||| |
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|
| T |
52716731 |
aagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataagaagtttagcagctctatattcaaac |
52716632 |
T |
|
| Q |
164 |
agaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaa |
263 |
Q |
| |
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| |||||| | | |||||||||||| | || |||||||| |||| ||| |||||||| | || || | ||||||||||||||| | | ||| || | |
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| T |
52716631 |
aaaaacaacataagagtgtaccaaataacactttgaagaacaacaatttgtaccataagatttcctgagaaatcaccatacatagctcttaaaagaggga |
52716532 |
T |
|
| Q |
264 |
ttcccataac |
273 |
Q |
| |
|
|||||||||| |
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|
| T |
52716531 |
ttcccataac |
52716522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 52711419 - 52711358
Alignment:
| Q |
68 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
129 |
Q |
| |
|
|||||||||||||||||||| || || || | |||||||| |||||||| ||||||||||| |
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|
| T |
52711419 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
52711358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 4 - 417
Target Start/End: Original strand, 10838577 - 10838990
Alignment:
| Q |
4 |
aacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataata |
103 |
Q |
| |
|
|||||| | ||| |||||||||||||| ||||| || |||||||||||||| ||||| | || | ||| || ||||| ||||||||||||| || |
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|
| T |
10838577 |
aacatgtaacttcccatcatcaccaactgatgcatcagtttcaagaaaatctcttccatctaacgacataacgtccgaatcgaccttaaaggaaacgatg |
10838676 |
T |
|
| Q |
104 |
gaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaa |
203 |
Q |
| |
|
||||| || ||||| |||||||| ||||| |||| ||||||||||||||| |||||||||||||| | || | |||||||||||| ||||||||||||| |
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|
| T |
10838677 |
gaagccgcggtttctggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagagtgtaccaaataatacactgaagaa |
10838776 |
T |
|
| Q |
204 |
ccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaa |
303 |
Q |
| |
|
|||||||||||||||| | | |||| ||||| |||||||||||||| || | | ||||||||||||||||||||||| || | |||||| | || || |
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|
| T |
10838777 |
ccacaacttgaaccattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaa |
10838876 |
T |
|
| Q |
304 |
gattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatg |
403 |
Q |
| |
|
|||||| |||||||| ||||| | ||||| ||||| ||||| | || |||||| | ||||||||||||||||||||||| || || || ||| |
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|
| T |
10838877 |
gattgttatcatccattctaaattgccatttttagtgaacaatgtccataatgaaagtgctactagcatgatgattttttgaagtgtgtctgcagctatg |
10838976 |
T |
|
| Q |
404 |
aacctatagttcat |
417 |
Q |
| |
|
||||| ||||||| |
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|
| T |
10838977 |
aacctgaagttcat |
10838990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 34971296 - 34971055
Alignment:
| Q |
5 |
acatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatag |
104 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||| || || | ||| ||| | ||||| | ||||| ||||||||||||||| || || || ||||||| |
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|
| T |
34971296 |
acatgaagtttaccatcttcaccaacttcagcttcagtttgaagtggctctttaccatccaaagaaagaacatcagaatcaactttgaatgatataatag |
34971197 |
T |
|
| Q |
105 |
aagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaac |
204 |
Q |
| |
|
|| ||||||| |||||||||||||| | ||| |||| | ||||||| | ||||||||| | |||||| | ||| || |||||||||||||| |||||||| |
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|
| T |
34971196 |
aaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaaaacaacatcaatgtataccaaatgatacattgaagaac |
34971097 |
T |
|
| Q |
205 |
cacaacttgaaccataagggtaccggaatattcaccatacat |
246 |
Q |
| |
|
|| | |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
34971096 |
aactatttgaaccataagggtaccagaatcatcaccatacat |
34971055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 282
Target Start/End: Complemental strand, 25038959 - 25038852
Alignment:
| Q |
175 |
caaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataacc |
274 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |||| ||| ||||| | |||| ||| ||||||||||||| || | || | ||||||||||||||| |
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|
| T |
25038959 |
caaagtataccaaatgatacattgaagaacaacaatttgtaccattaaactacctgaaaattcaccatacattcctttaagtaaaggaattcccataacc |
25038860 |
T |
|
| Q |
275 |
aaagtgtt |
282 |
Q |
| |
|
|||||||| |
|
|
| T |
25038859 |
aaagtgtt |
25038852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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