View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_182 (Length: 250)
Name: NF10201A_low_182
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_182 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 38980931 - 38980708
Alignment:
| Q |
22 |
gtgcattattaaaagagagtgagaattgatctctaatgagttgcacttgcaccttgtgctggtggtggaacttgttgttgttgt---ggtggtggacgct |
118 |
Q |
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| T |
38980931 |
gtgcattattaaaagagagtgagaattgatctctaatgagttgcacttgcaccttgtgctggtggtggaacttgttgttgttgttgtggtggtggacgct |
38980832 |
T |
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| Q |
119 |
ttcgtttcttcttctcgtaactaatacctcttgctttcgattgaagatcgcgaacttcgcgaaggtagagcctcacagctctagcaccaaatggatttgt |
218 |
Q |
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| T |
38980831 |
ttcgtttcttcttctcgtaactaatacctcttgctttcgattgaagatcgcgaacttcgcgaaggtagagcctcacagctctagcaccaaatggatttgt |
38980732 |
T |
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| Q |
219 |
ttctggttttcctccatattcttc |
242 |
Q |
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| T |
38980731 |
ttctggttttcctccattttcttc |
38980708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 93 - 235
Target Start/End: Original strand, 30503807 - 30503949
Alignment:
| Q |
93 |
ttgttgttgttgtggtggtggacgctttcgtttcttcttctcgtaactaatacctcttgctttcgattgaagatcgcgaacttcgcgaaggtagagcctc |
192 |
Q |
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| T |
30503807 |
ttgtggttgttgttgtggtggacgtttccttttcttcttctcataactaatacctcttgctttggattgaagatcacgaacctcacgaaggtaaagtcta |
30503906 |
T |
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| Q |
193 |
acagctctagcaccaaatggatttgtttctggttttcctccat |
235 |
Q |
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| T |
30503907 |
acagctctagcaccaaatggatttgtttctggcttccctccat |
30503949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 15970571 - 15970498
Alignment:
| Q |
112 |
ggacgctttcgtttcttcttctcgtaactaatacctcttgctttcgattgaagatcgcgaacttcgcgaaggta |
185 |
Q |
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|||||||| || ||||| ||||| |||||||||||||| ||||| | |||| ||| | ||||||||||||||| |
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| T |
15970571 |
ggacgcttgcgcttctttttctcataactaatacctctagctttagcttgagaatccctaacttcgcgaaggta |
15970498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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