View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_188 (Length: 250)

Name: NF10201A_low_188
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_188
NF10201A_low_188
[»] chr1 (3 HSPs)
chr1 (8-151)||(24197647-24197789)
chr1 (177-244)||(24197467-24197534)
chr1 (8-59)||(17633331-17633382)
[»] chr6 (2 HSPs)
chr6 (10-149)||(4918887-4919030)
chr6 (11-74)||(10744195-10744258)
[»] chr3 (4 HSPs)
chr3 (17-69)||(38373546-38373598)
chr3 (8-58)||(49757685-49757735)
chr3 (23-71)||(3942072-3942120)
chr3 (18-60)||(39213540-39213582)
[»] chr2 (1 HSPs)
chr2 (8-59)||(33202438-33202489)
[»] chr5 (3 HSPs)
chr5 (8-59)||(27022661-27022712)
chr5 (23-59)||(18443872-18443908)
chr5 (15-59)||(37496042-37496086)
[»] chr8 (1 HSPs)
chr8 (80-149)||(8021336-8021406)
[»] chr7 (1 HSPs)
chr7 (12-66)||(7359805-7359859)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 24197789 - 24197647
Alignment:
Q  8 ttggtgttattgtttgtgattgaaatatatgacttcaaaagtcatatttaattaatgaggaatggaacaaatatgtactcttttcaaaatatgttagtgg 107  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||  ||| ||||| ||||||||||||||||||||||||  ||||||||||    
T  24197789 ttggtgttattgtttgtaattgaaatatatgacttcataagtcatatttaatacatgcggaatagaacaaatatgtactcttttcaaa--atgttagtgg 24197692  T
Q  108 tttgtgcatgtag-ttgtgattgtaatacactactccaaagtcgt 151  Q
    ||||||||||| | ||||||||||||| ||| ||||| |||||||    
T  24197691 tttgtgcatgttgtttgtgattgtaattcacaactccgaagtcgt 24197647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 24197534 - 24197467
Alignment:
Q  177 gcatgcattcaccaaggtttgataggtttctgaaatgattctccttgaaattgattcatggaaattgt 244  Q
    ||||| ||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  24197534 gcatggattaaccatggtttgatagatttgtgaaatgattctccttgaaattgattcatggaaattgt 24197467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 17633382 - 17633331
Alignment:
Q  8 ttggtgttattgtttgtgattgaaatatatgacttcaaaagtcatatttaat 59  Q
    |||||||| |||||||||||||||||| |||||| ||||||| |||||||||    
T  17633382 ttggtgttgttgtttgtgattgaaatacatgactccaaaagtaatatttaat 17633331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 4919030 - 4918887
Alignment:
Q  10 ggtgttattgtttgtgattgaaatatatgacttcaaaagtcatatttaattaatgaggaatggaacaaatatgtactcttttcaaaatatgttagtggtt 109  Q
    |||||| |||||| | ||||||||| |||| |||||||||||||||||||  ||||||||||  | | ||||||| | | |  || |||| | |||||||    
T  4919030 ggtgttgttgtttctaattgaaatacatgatttcaaaagtcatatttaatacatgaggaatgagatagatatgtattatatgtaagatatatgagtggtt 4918931  T
Q  110 tgtgcatgtag----ttgtgattgtaatacactactccaaagtc 149  Q
    ||||||| |||    ||||||||| |||||| ||||||||||||    
T  4918930 tgtgcatatagtagtttgtgattgaaatacattactccaaagtc 4918887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 10744195 - 10744258
Alignment:
Q  11 gtgttattgtttgtgattgaaatatatgacttcaaaagtcatatttaattaatgaggaatggaa 74  Q
    |||||||||||||||||||||||  |||||| ||| |||||| ||||||| ||||| |||||||    
T  10744195 gtgttattgtttgtgattgaaatgcatgactccaagagtcatgtttaattcatgagaaatggaa 10744258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 38373598 - 38373546
Alignment:
Q  17 ttgtttgtgattgaaatatatgacttcaaaagtcatatttaattaatgaggaa 69  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||| ||||||||    
T  38373598 ttgtttgtgattgaaatgtatgacttcaagagtcatgtttaattcatgaggaa 38373546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 49757735 - 49757685
Alignment:
Q  8 ttggtgttattgtttgtgattgaaatatatgacttcaaaagtcatatttaa 58  Q
    ||||| || |||||||||||||||||| ||||||||| |||||||||||||    
T  49757735 ttggttttgttgtttgtgattgaaatacatgacttcagaagtcatatttaa 49757685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 3942120 - 3942072
Alignment:
Q  23 gtgattgaaatatatgacttcaaaagtcatatttaattaatgaggaatg 71  Q
    |||||||||||| |||||||||||| |||||||||||  ||||||||||    
T  3942120 gtgattgaaatacatgacttcaaaaatcatatttaatacatgaggaatg 3942072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 39213582 - 39213540
Alignment:
Q  18 tgtttgtgattgaaatatatgacttcaaaagtcatatttaatt 60  Q
    ||||||||||| |||||||||||||||||||| || |||||||    
T  39213582 tgtttgtgatttaaatatatgacttcaaaagtaatgtttaatt 39213540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 33202438 - 33202489
Alignment:
Q  8 ttggtgttattgtttgtgattgaaatatatgacttcaaaagtcatatttaat 59  Q
    |||||||  |||||||||||| ||||| ||||||||||||||||||||||||    
T  33202438 ttggtgtcgttgtttgtgattaaaataaatgacttcaaaagtcatatttaat 33202489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 27022661 - 27022712
Alignment:
Q  8 ttggtgttattgtttgtgattgaaatatatgacttcaaaagtcatatttaat 59  Q
    |||||||| |||||||||||||||||  |||||| ||||||| |||||||||    
T  27022661 ttggtgttgttgtttgtgattgaaatccatgactccaaaagttatatttaat 27022712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 18443908 - 18443872
Alignment:
Q  23 gtgattgaaatatatgacttcaaaagtcatatttaat 59  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  18443908 gtgattgatatacatgacttcaaaagtcatatttaat 18443872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 37496042 - 37496086
Alignment:
Q  15 tattgtttgtgattgaaatatatgacttcaaaagtcatatttaat 59  Q
    |||| ||| |||||||||||||||||||||| | |||||||||||    
T  37496042 tattttttatgattgaaatatatgacttcaataatcatatttaat 37496086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 8021336 - 8021406
Alignment:
Q  80 atgtactcttttcaaaatatgttagtggtttgtgcatgtagtt-gtgattgtaatacactactccaaagtc 149  Q
    ||||| ||||| | |||||| ||||||||| |||||| ||||| ||||||| |||||| ||||||||||||    
T  8021336 atgtattctttgccaaatatattagtggttagtgcatatagtttgtgattgaaatacattactccaaagtc 8021406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 7359805 - 7359859
Alignment:
Q  12 tgttattgtttgtgattgaaatatatgacttcaaaagtcatatttaattaatgag 66  Q
    ||||| ||||| |||| ||||||||||||||||| |||||| ||||||| |||||    
T  7359805 tgttagtgtttttgatcgaaatatatgacttcaagagtcatgtttaattcatgag 7359859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University