View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_190 (Length: 250)

Name: NF10201A_low_190
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_190
NF10201A_low_190
[»] chr5 (1 HSPs)
chr5 (22-215)||(7617528-7617719)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 7617719 - 7617528
Alignment:
22 catataataaaacaatgatgcatgtgatttcaatgaatgtgtgaagccaatagggtgtgcttttataagcttctgttctgtctttaaagtgnnnnnnnnn 121  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
7617719 catataagaaatcaatgatgcatgtgatttcaatgaatgtgtgaagccaatagggtgtgcttttataagcttctgttctgtctttaaagtgaaaaaaa-- 7617622  T
122 ccggaaagtagcagcgaaattggctttacactatggaaaaacagtgcactttgctaattatatttagtttatacttcaaaataaattaactaac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7617621 ccggaaagtagcagcgaaattggctttacactatggaaaaacagtgcactttgctaattatatttagtttatacttcaaaataaattaactaac 7617528  T

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