View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_192 (Length: 250)
Name: NF10201A_low_192
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_192 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 21642420 - 21642663
Alignment:
| Q |
7 |
actctttactttaaattaaaccccggcccccatttatctcacgcccgtcatctcttcgactcacttcacgtcaaagatgttatctcatggacttcactta |
106 |
Q |
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| T |
21642420 |
actctttactttaaattaaaccccggcccccatttatctcacgcccgtcatctcttcgactcacttcacgtcaaagatgtcatctcatggacttcactta |
21642519 |
T |
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| Q |
107 |
tctccggttacactcgctccggccagccacatcagtcgatatctttattctacgaaatgttggcatttcctattcaacccaatgcttttactctatcttc |
206 |
Q |
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||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21642520 |
tctccggttacactcgctccgacctgccacatcaatcgatatctttattctacgaaatgttggcatttcctgttcaacccaatgcttttactctatcttc |
21642619 |
T |
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| Q |
207 |
cgttattaaagcttgttctacgttgaatgacgtaaaccttggga |
250 |
Q |
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||||| |||||||||||| |||| ||||||||||||||||||| |
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| T |
21642620 |
tgttatcaaagcttgttctgcgttaaatgacgtaaaccttggga |
21642663 |
T |
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