View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_197 (Length: 248)
Name: NF10201A_low_197
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_197 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 9215435 - 9215544
Alignment:
| Q |
1 |
ggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaagaaactaaacttatgt |
100 |
Q |
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| T |
9215435 |
ggaatgacatttgtggattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaagaaactaaacttatgt |
9215534 |
T |
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| Q |
101 |
ttcttgtgag |
110 |
Q |
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|||||||||| |
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| T |
9215535 |
ttcttgtgag |
9215544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 9215614 - 9215677
Alignment:
| Q |
180 |
gttctaaagaggtcctattcaaccgaaaagggagtgaaacatggatgtgtagatatactgatct |
243 |
Q |
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| T |
9215614 |
gttctaaagaggtcctattcaaccaaaaagggaatgaaacatggatgtgtagatatactgatct |
9215677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 25158915 - 25158812
Alignment:
| Q |
1 |
ggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaagaaactaaacttatgt |
100 |
Q |
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| T |
25158915 |
ggaatgacctttgttgattataagaatggcttgaaaagataccagaagttgtctgcattgtggtttaagaattttctcaaaaaagaaactaagcttatgt |
25158816 |
T |
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| Q |
101 |
ttct |
104 |
Q |
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|||| |
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| T |
25158815 |
ttct |
25158812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25253930 - 25254006
Alignment:
| Q |
1 |
ggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttct |
77 |
Q |
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| T |
25253930 |
ggaatgacctttgtagattacaaaaatggtttgaaaagatatcaaaagctctcagggttgtggttcaagaattttct |
25254006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 25179079 - 25179001
Alignment:
| Q |
1 |
ggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctca |
79 |
Q |
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| T |
25179079 |
ggaatgacttttatagattacaaagatggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttctca |
25179001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 25167377 - 25167300
Alignment:
| Q |
1 |
ggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctc |
78 |
Q |
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|||||||| || ||||||||||| ||||||||||||||||| | || || || | |||||||||| ||||||||||| |
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| T |
25167377 |
ggaatgacattcgtagattacaaaaatggtttgaaaagatatcaaaagctctcgggattgtggttccagaattttctc |
25167300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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