View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_198 (Length: 248)

Name: NF10201A_low_198
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_198
NF10201A_low_198
[»] chr1 (6 HSPs)
chr1 (14-248)||(15730222-15730456)
chr1 (14-248)||(15737825-15738053)
chr1 (76-248)||(15766788-15766960)
chr1 (137-227)||(15755940-15756030)
chr1 (76-240)||(15779932-15780096)
chr1 (171-243)||(33411436-33411508)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 15730456 - 15730222
Alignment:
Q  14 aaactaatctcttgtaatcacttggtatgacacgacactaatcttctacttcaattcttctgcaagcacttttatggaatctgaaatttcagctctatat 113  Q
    |||||||||||||| |||||||||||||||||| |||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15730456 aaactaatctcttggaatcacttggtatgacacaacacttgtcttctccttcaattcttctgcaagcacttttatggaatctgaaatttcagctctatat 15730357  T
Q  114 acataatactttgtaacaatacaaaagaatataaagttcaagacatttagtatagccaaaaatgcatagtagtaatcaagatgagaagcattaagattat 213  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15730356 acataatacttcgtaacaatacaaaagaagataaagttcaagacatttagtatagccaaaaatgcatagtagtaatcaagatgagaagcattaagattat 15730257  T
Q  214 tcagaatccaccctttgtgaccatgttcctcagtg 248  Q
    ||| |||||||||||||||||||||||||||||||    
T  15730256 tcaaaatccaccctttgtgaccatgttcctcagtg 15730222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 15738053 - 15737825
Alignment:
Q  14 aaactaatctcttgtaatcacttggtatgacacgacactaatcttctacttcaattcttctgcaagcacttttatggaatctgaaatttcagctctatat 113  Q
    |||||||||||||||| ||||||| ||||||||     || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15738053 aaactaatctcttgtagtcacttg-tatgacac-----tagttttctacttcaattcttctgcaagcacttttatggaatctgaaatttcagctctatat 15737960  T
Q  114 acataatactttgtaacaatacaaaagaatataaagttcaagacatttagtatagccaaaaatgcatagtagtaatcaagatgagaagcattaagattat 213  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15737959 acataatactttgtaacaatacaaaagaagataaagttcaagacatttagtattgccaaaaatgcatagtagtaatcaagatgagaagcattaagattat 15737860  T
Q  214 tcagaatccaccctttgtgaccatgttcctcagtg 248  Q
    ||| |||||||||||||||||||||||||||||||    
T  15737859 tcaaaatccaccctttgtgaccatgttcctcagtg 15737825  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 248
Target Start/End: Complemental strand, 15766960 - 15766788
Alignment:
Q  76 caagcacttttatggaatctgaaatttcagctctatatacataatactttgtaacaatacaaaagaatataaagttcaagacatttagtatagccaaaaa 175  Q
    |||| |||||||  |||| |||||| ||||||||||  |||||  |||||| |||||    |||||| | |||||| | |||||||||||||||||||||    
T  15766960 caagaacttttagagaatttgaaatgtcagctctatgcacatagaactttgaaacaaccacaaagaagacaaagtttatgacatttagtatagccaaaaa 15766861  T
Q  176 tgcatagtagtaatcaagatgagaagcattaagattattcagaatccaccctttgtgaccatgttcctcagtg 248  Q
    |||||||||||||||||||||||||||||| |  ||||||| ||||||||||  | |||| |||| |||||||    
T  15766860 tgcatagtagtaatcaagatgagaagcattcaagttattcaaaatccaccctcggcgaccgtgtttctcagtg 15766788  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 15756030 - 15755940
Alignment:
Q  137 aaagaatataaagttcaagacatttagtatagccaaaaatgcatagtagtaatcaagatgagaagcattaagattattcagaatccaccct 227  Q
    |||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |  ||||||| ||||||||||    
T  15756030 aaagaagacaaagttcaagacatttagtatggccaaaaatgcatagtagtaatcaagatgagaagcattcaagttattcaaaatccaccct 15755940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 76 - 240
Target Start/End: Complemental strand, 15780096 - 15779932
Alignment:
Q  76 caagcacttttatggaatctgaaatttcagctctatatacataatactttgtaacaatacaaaagaatataaagttcaagacatttagtatagccaaaaa 175  Q
    ||||||||||||  |||||||||| ||||||||| || |||||    ||||  |||||    ||||| || ||||||| | |||||||||| ||||||||    
T  15780096 caagcacttttagagaatctgaaacttcagctctgtagacatagatttttgagacaatcatgaagaaaatgaagttcagggcatttagtattgccaaaaa 15779997  T
Q  176 tgcatagtagtaatcaagatgagaagcattaagattattcagaatccaccctttgtgaccatgtt 240  Q
    ||| |||||||||||||||||||||||||| || || |||| ||||||||||| ||||| |||||    
T  15779996 tgcgtagtagtaatcaagatgagaagcatttaggttgttcaaaatccacccttggtgactatgtt 15779932  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 33411436 - 33411508
Alignment:
Q  171 aaaaatgcatagtagtaatcaagatgagaagcattaagattattcagaatccaccctttgtgaccatgttcct 243  Q
    ||||| |||||||||||||||||||||||| |||| ||||| |||| |||||||||||| |||||||||||||    
T  33411436 aaaaacgcatagtagtaatcaagatgagaatcattcagattgttcaaaatccaccctttatgaccatgttcct 33411508  T

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