View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_199 (Length: 248)

Name: NF10201A_low_199
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_199
NF10201A_low_199
[»] scaffold0286 (1 HSPs)
scaffold0286 (21-229)||(11989-12197)
[»] chr6 (2 HSPs)
chr6 (21-229)||(2171064-2171272)
chr6 (7-227)||(2187347-2187567)


Alignment Details
Target: scaffold0286 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 12197 - 11989
Alignment:
Q  21 ttgatggattgcattgcatgagatgaagaaattgaacatttgaagacaccatggagcttggtttatcattctcatgagcattaatccaagacaatttatg 120  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12197 ttgacggattgcattgcatgagatgaagaaattgaacatttgaagacaccatggagcttggtttatcattctcatgagcattaatccaggacaatttatg 12098  T
Q  121 aggcattccacttccaactattcgtagagtatggaccctcacgagatttagaaatgaacatggaaattgttctatggaggtgccaaccaattcaatgtat 220  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12097 aggcattccacttcaaactattcgtagagtatggaccctcacgagatttagaaatgaacatggaaattgttctatggaggtgccaaccaattcaatgtat 11998  T
Q  221 gttatatct 229  Q
    |||||||||    
T  11997 gttatatct 11989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 2171064 - 2171272
Alignment:
Q  21 ttgatggattgcattgcatgagatgaagaaattgaacatttgaagacaccatggagcttggtttatcattctcatgagcattaatccaagacaatttatg 120  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2171064 ttgacggattgcattgcatgagatgaagaaattgaacatttgaagacaccatggagcttggtttatcattctcatgagcattaatccaggacaatttatg 2171163  T
Q  121 aggcattccacttccaactattcgtagagtatggaccctcacgagatttagaaatgaacatggaaattgttctatggaggtgccaaccaattcaatgtat 220  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2171164 aggcattccacttcaaactattcgtagagtatggaccctcacgagatttagaaatgaacatggaaattgttctatggaggtgccaaccaattcaatgtat 2171263  T
Q  221 gttatatct 229  Q
    |||||||||    
T  2171264 gttatatct 2171272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 2187567 - 2187347
Alignment:
Q  7 tcgaacaatatcgtttgatggattgcattgcatgagatgaagaaattgaacatttgaagacaccatggagcttggtttatcattctcatgagcattaatc 106  Q
    ||||| || ||| ||||||||||||||||  ||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||| ||| |||||||||||    
T  2187567 tcgaagaaaatcatttgatggattgcattctatgagatgaagaaattgaacatttgaatacaccgtggagctcggtatatcattttcacgagcattaatc 2187468  T
Q  107 caagacaatttatgaggcattccacttccaactattcgtagagtatggaccctcacgagatttagaaatgaacatggaaattgttctatggaggtgccaa 206  Q
    |||||||| ||||||||| |||||||||||| |||| ||| |||||||||| |   ||||||| |||| ||| ||||||||||||||||||| || ||||    
T  2187467 caagacaaattatgaggctttccacttccaaatatttgtaaagtatggaccatggagagattttgaaaggaaaatggaaattgttctatggaagtaccaa 2187368  T
Q  207 ccaattcaatgtatgttatat 227  Q
    |||||||||||||||||||||    
T  2187367 ccaattcaatgtatgttatat 2187347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University