View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_2 (Length: 660)

Name: NF10201A_low_2
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_2
NF10201A_low_2
[»] chr6 (4 HSPs)
chr6 (248-637)||(13356009-13356396)
chr6 (56-224)||(13355787-13355955)
chr6 (251-302)||(15294657-15294708)
chr6 (251-302)||(15295395-15295446)
[»] chr7 (2 HSPs)
chr7 (340-620)||(19085683-19085944)
chr7 (257-302)||(48625061-48625106)
[»] chr3 (1 HSPs)
chr3 (248-302)||(35650822-35650876)
[»] chr8 (3 HSPs)
chr8 (253-299)||(22810452-22810498)
chr8 (255-302)||(14734572-14734619)
chr8 (257-302)||(34347800-34347845)
[»] chr5 (1 HSPs)
chr5 (257-302)||(31658206-31658251)
[»] chr2 (4 HSPs)
chr2 (257-302)||(23175271-23175316)
chr2 (257-302)||(23386988-23387033)
chr2 (257-302)||(23586528-23586573)
chr2 (257-302)||(30874694-30874739)
[»] chr4 (1 HSPs)
chr4 (255-291)||(12068199-12068235)


Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 248 - 637
Target Start/End: Original strand, 13356009 - 13356396
Alignment:
Q  248 ttcaaaatcattcttatcattctcacataagatgttcattctcacttgatatgccattctttagttttaaaatgtaagtatcgtaacatctcaattttga 347  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||    
T  13356009 ttcaaaatcattcctatcattctcaaataagatgttcattctcacttgatatgtcattctttaatttttaaatgtaagtatcataacatctcaattttga 13356108  T
Q  348 tttaccataaagttgatcttcaccctgagaaaagacacgtttaacttcgtttttctcttggacctcttcttcattgttatcatcattatcactacgtatc 447  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13356109 tttaccataaagttggtcttcaccctgagaaaagacacgtttaacttcgtttttctcttggacctcttcttcattgttatcatcattatcactacatatc 13356208  T
Q  448 attgtctcacctccatgttgatcatagtatatgtttcaccttgcagaaagtgcatcaactttggccattctcttatttctgttatatatgaaatatttta 547  Q
    ||| ||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13356209 attatc--acctccatgttgatcatagtatatgtttcatcttgcagaaagtgcatcaactttggccattctcttatttctgttatatatgaaatatttta 13356306  T
Q  548 ataaagcaataaatacataataaaaatgacacgtgcattgttcaatatattttgcatgaaatatatacatgaagtgggaatacaaaaata 637  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13356307 ataaagcaataaatacataataaaaatgacacgtgcattgttcaatatattttgcatgaaatatatacatgaagtgggaatacaaaaata 13356396  T

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Target: chr6; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 13355787 - 13355955
Alignment:
Q  56 ggagataaatggatctttgatgtaatccaaaatatgggttgtctttgacaatgttaccactagtcagcatcacaggtggagtggatatactttgatggct 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  13355787 ggagataaatggatctttgatgtaatccaaaatatgggttgtctttgacaatgttaccactggttagcatcacaggtggagtggatatactttgatggct 13355886  T
Q  156 gaaaagaatttcattttctgggtagaaagatttcctttgtagctatgcagaagaagaaaagaggtgcgc 224  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  13355887 gaaaagaatttcattttctgggtagaaggatttcctttgtagctatgcggaagaagaaaagaggtgcgc 13355955  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 15294708 - 15294657
Alignment:
Q  251 aaaatcattcttatcattctcacataagatgttcattctcacttgatatgcc 302  Q
    |||| |||||| ||||||||||||||||||| |||||||||  |||||||||    
T  15294708 aaaaacattctcatcattctcacataagatggtcattctcatgtgatatgcc 15294657  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 15295395 - 15295446
Alignment:
Q  251 aaaatcattcttatcattctcacataagatgttcattctcacttgatatgcc 302  Q
    |||| |||||| ||||||||||||||||||| |||||||||  |||||||||    
T  15295395 aaaaacattctcatcattctcacataagatggtcattctcatgtgatatgcc 15295446  T

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Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 340 - 620
Target Start/End: Complemental strand, 19085944 - 19085683
Alignment:
Q  340 aattttgatttaccata-aagttgatcttcaccctgagaaaagacacgtttaacttcgtttttctcttggacctcttcttcattgttatcatcattatca 438  Q
    ||||||||||||||||| ||||| ||||||||| | ||||||| ||||||||||||| || |||||||||||||||||            |||  |||||    
T  19085944 aattttgatttaccatagaagtttatcttcaccataagaaaagtcacgtttaacttctttgttctcttggacctcttc------------atcggtatca 19085857  T
Q  439 ctacgtatcattgtctcacctccatgttgatcatagtatatgtttcaccttgcagaaagtgcatcaactttggccattctcttatttctgttatatatga 538  Q
    || | ||||||||| |||||| |||||||||| || ||||||||||  ||||||||||  |||||| |||| | |||||||| ||||||||| | | |||    
T  19085856 ctgcatatcattgtttcacctgcatgttgatcgtaatatatgtttcgtcttgcagaaaaggcatcagctttcgtcattctctcatttctgttttgtgtga 19085757  T
Q  539 aatattttaataaagcaataaatacataataaaaatgacacgtgcattgttcaatatattttgcatgaaatatatacatgaa 620  Q
    || ||||||||||||||| | |        ||||||||||| ||||||| ||||||||||| |||| |||| ||||| ||||    
T  19085756 aagattttaataaagcaacaca--------aaaaatgacacatgcattgatcaatatatttagcattaaatgtatacttgaa 19085683  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 48625106 - 48625061
Alignment:
Q  257 attcttatcattctcacataagatgttcattctcacttgatatgcc 302  Q
    |||| |||||||||||||||| || | |||||||||||||||||||    
T  48625106 attcctatcattctcacataacatatccattctcacttgatatgcc 48625061  T

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Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 35650876 - 35650822
Alignment:
Q  248 ttcaaaatcattcttatcattctcacataagatgttcattctcacttgatatgcc 302  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  35650876 ttcaaaatcattcctatcattctcacataagatgtccattctcacttgatatgcc 35650822  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 22810452 - 22810498
Alignment:
Q  253 aatcattcttatcattctcacataagatgttcattctcacttgatat 299  Q
    |||||||| ||||||||||||||||||| |||||||||| |||||||    
T  22810452 aatcattcctatcattctcacataagatattcattctcatttgatat 22810498  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 14734572 - 14734619
Alignment:
Q  255 tcattcttatcattctcacataagatgttcattctcacttgatatgcc 302  Q
    |||||| |||| |||||| ||||||||| |||||||||||||||||||    
T  14734572 tcattcctatctttctcatataagatgtacattctcacttgatatgcc 14734619  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 34347845 - 34347800
Alignment:
Q  257 attcttatcattctcacataagatgttcattctcacttgatatgcc 302  Q
    |||| |||||||||||||||| || | |||||||||||||||||||    
T  34347845 attcatatcattctcacataacatatccattctcacttgatatgcc 34347800  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 31658251 - 31658206
Alignment:
Q  257 attcttatcattctcacataagatgttcattctcacttgatatgcc 302  Q
    ||||||||||||||||||||| || | |||||||||||||||||||    
T  31658251 attcttatcattctcacataacatatccattctcacttgatatgcc 31658206  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 23175271 - 23175316
Alignment:
Q  257 attcttatcattctcacataagatgttcattctcacttgatatgcc 302  Q
    |||| |||||||||||||||| || | |||||||||||||||||||    
T  23175271 attcctatcattctcacataacatatccattctcacttgatatgcc 23175316  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 23387033 - 23386988
Alignment:
Q  257 attcttatcattctcacataagatgttcattctcacttgatatgcc 302  Q
    |||| |||||||||||||||| || | |||||||||||||||||||    
T  23387033 attcctatcattctcacataacatatccattctcacttgatatgcc 23386988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 23586528 - 23586573
Alignment:
Q  257 attcttatcattctcacataagatgttcattctcacttgatatgcc 302  Q
    |||| |||||||||||||||| || | |||||||||||||||||||    
T  23586528 attcctatcattctcacataacatatccattctcacttgatatgcc 23586573  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 30874739 - 30874694
Alignment:
Q  257 attcttatcattctcacataagatgttcattctcacttgatatgcc 302  Q
    |||||||||||||||||||||  | | |||||||||||||||||||    
T  30874739 attcttatcattctcacataacttatccattctcacttgatatgcc 30874694  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 12068235 - 12068199
Alignment:
Q  255 tcattcttatcattctcacataagatgttcattctca 291  Q
    |||||||||||||||||| |||||| |||||||||||    
T  12068235 tcattcttatcattctcatataagaagttcattctca 12068199  T

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