View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_200 (Length: 247)
Name: NF10201A_low_200
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_200 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 3343584 - 3343823
Alignment:
| Q |
9 |
tggtgttagcctcagtttcttggttggtaagcttggttttagaaaacatgaggatgaaagtaccatgatatgtgacccaattgaagtcatgcctgttttt |
108 |
Q |
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| T |
3343584 |
tggtgttagcctcagtttcttggttggtaagcttggtttcagaaaacatgaggatgaaagtaccatgatatgtgacccaattgaagtcatgcctgttttt |
3343683 |
T |
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| Q |
109 |
aagtaagcatcaatggatggtttgtgtccatttctactccaggttgcctctacgaaccatgaaaggaaaacttcataccacttcac-aaatcaaacacaa |
207 |
Q |
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| T |
3343684 |
aagtaagcatcaatggatggtttgtgtccatttctactccaggttgcctctatgaaccatgaaaggaaaacttcataccacttcacaaaatgaaacacaa |
3343783 |
T |
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| Q |
208 |
ttaacaatgttattgctttgctatagattttttcattaaa |
247 |
Q |
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| T |
3343784 |
tttacaatgttattgctttgctataatgtttttcattaaa |
3343823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 3368457 - 3368660
Alignment:
| Q |
26 |
tcttggttggtaagcttggttttagaaaacatgaggatgaaagtaccatgatatgtgacccaattgaagtcatgcctgtttttaagtaagcatcaatgga |
125 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||| |||| || ||||| | | |||||||||||||||||| | |||| ||||| ||| |
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| T |
3368457 |
tcttggttggtaagcttggtttcagaaaacatgaggatggaagcaccaagacatgtgggcaagctgaagtcatgcctgttttgaggtaacaatcaaggga |
3368556 |
T |
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| Q |
126 |
tggtttgtgtccatttctactccaggttgcctctacgaaccatgaaaggaaaacttcataccacttcacaaatcaaacacaattaacaatg-ttattgct |
224 |
Q |
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| T |
3368557 |
tggtttgtgtccatttctgctccattttgcctctatgagccatgaaaggaaaacttcataccacttcacaaatgaaacacattttacaatgtttattgct |
3368656 |
T |
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| Q |
225 |
ttgc |
228 |
Q |
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|||| |
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| T |
3368657 |
ttgc |
3368660 |
T |
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