View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_203 (Length: 246)
Name: NF10201A_low_203
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_203 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 32715596 - 32715776
Alignment:
| Q |
50 |
ctaattgtttttcttagattttctgctgaatttccgtgagatttgtaactgttccaattaatttctgcatgttgggaattgggaagaaaaagaggaacat |
149 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32715596 |
ctaattgtttttcctagattttcggctgaatttccgtgagatttgtaactgttccaattaatttctgcatgttgggcattgggaagaaaaagaggaacat |
32715695 |
T |
|
| Q |
150 |
ttaaattcaatgtatttgcaagcttaaaacttcacagcannnnnnnnnnnaaggaaaagcttcacaacatttaagttagcat |
231 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32715696 |
ttaaattcaatgcatttgcaagcttaaaacttcacagca-ttttttttttaaggaaaagcttcacaacatttaagttagcat |
32715776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32715225 - 32715264
Alignment:
| Q |
1 |
taaaccttgggaattaagcaaatatctgtaaggtttatcc |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32715225 |
taaaccttgggaattaagcaaatatctgtaaggtttatcc |
32715264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University