View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF10201A_low_203 (Length: 246)
Name: NF10201A_low_203
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 32715596 - 32715776
Alignment:
| Q | 50 | ctaattgtttttcttagattttctgctgaatttccgtgagatttgtaactgttccaattaatttctgcatgttgggaattgggaagaaaaagaggaacat | 149 | Q |
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| T | 32715596 | ctaattgtttttcctagattttcggctgaatttccgtgagatttgtaactgttccaattaatttctgcatgttgggcattgggaagaaaaagaggaacat | 32715695 | T |
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| Q | 150 | ttaaattcaatgtatttgcaagcttaaaacttcacagcannnnnnnnnnnaaggaaaagcttcacaacatttaagttagcat | 231 | Q |
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| T | 32715696 | ttaaattcaatgcatttgcaagcttaaaacttcacagca-ttttttttttaaggaaaagcttcacaacatttaagttagcat | 32715776 | T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32715225 - 32715264
Alignment:
| Q | 1 | taaaccttgggaattaagcaaatatctgtaaggtttatcc | 40 | Q |
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| T | 32715225 | taaaccttgggaattaagcaaatatctgtaaggtttatcc | 32715264 | T |
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