View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_207 (Length: 246)

Name: NF10201A_low_207
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_207
NF10201A_low_207
[»] chr4 (1 HSPs)
chr4 (55-126)||(11122301-11122373)
[»] chr6 (2 HSPs)
chr6 (188-240)||(30732381-30732431)
chr6 (147-205)||(30013797-30013856)
[»] chr7 (1 HSPs)
chr7 (192-239)||(31627380-31627426)
[»] chr8 (3 HSPs)
chr8 (188-239)||(13639415-13639468)
chr8 (188-239)||(13739828-13739881)
chr8 (186-220)||(25874441-25874475)
[»] chr5 (1 HSPs)
chr5 (188-218)||(42069781-42069811)
[»] chr1 (3 HSPs)
chr1 (188-222)||(5950924-5950958)
chr1 (186-218)||(46742307-46742339)
chr1 (188-240)||(48781406-48781458)
[»] chr3 (1 HSPs)
chr3 (188-216)||(653272-653300)


Alignment Details
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 11122373 - 11122301
Alignment:
Q  55 aagttcaaagggtcttgatcagagaataatattgttt-actgccaaaaacaacctcttgtcactgttttaaat 126  Q
    ||||||||||||||||| ||| || | |||||||||| ||| || ||||||||||||||||||| ||||||||    
T  11122373 aagttcaaagggtcttgctcataggagaatattgttttactacctaaaacaacctcttgtcactattttaaat 11122301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 30732431 - 30732381
Alignment:
Q  188 atacatcaattattcaataaatttaaaaaatagttcttttttgcttataataa 240  Q
    ||||||||||||||||||||| ||||||||||||  ||||||| |||||||||    
T  30732431 atacatcaattattcaataaacttaaaaaatagt--ttttttgtttataataa 30732381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 30013797 - 30013856
Alignment:
Q  147 tttatcgaataatttatgtatctgatttctatacatata--atatacatcaattattcaat 205  Q
    ||||||||||||||||||||| |||||| || ||||| |  ||||||||||||||||||||    
T  30013797 tttatcgaataatttatgtatttgatttata-acatagactatatacatcaattattcaat 30013856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 31627380 - 31627426
Alignment:
Q  192 atcaattattcaataaatttaaaaaatagttcttttttgcttataata 239  Q
    |||||||||||||||||||||||||||| || |||||| |||||||||    
T  31627380 atcaattattcaataaatttaaaaaataatt-tttttttcttataata 31627426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 13639415 - 13639468
Alignment:
Q  188 atacatcaattattcaataaatttaaaaaatag--ttcttttttgcttataata 239  Q
    |||||||||||||||||||||| |||||| |||  || ||||||||||||||||    
T  13639415 atacatcaattattcaataaatctaaaaattagattttttttttgcttataata 13639468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 13739828 - 13739881
Alignment:
Q  188 atacatcaattattcaataaatttaaaaaatag--ttcttttttgcttataata 239  Q
    |||||||||||||||||||||| |||||| |||  || ||||||||||||||||    
T  13739828 atacatcaattattcaataaatctaaaaattagattttttttttgcttataata 13739881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 25874475 - 25874441
Alignment:
Q  186 atatacatcaattattcaataaatttaaaaaatag 220  Q
    ||||||||||||||||||||||||||| |||||||    
T  25874475 atatacatcaattattcaataaatttataaaatag 25874441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 218
Target Start/End: Complemental strand, 42069811 - 42069781
Alignment:
Q  188 atacatcaattattcaataaatttaaaaaat 218  Q
    |||||||||||||||||||||||||||||||    
T  42069811 atacatcaattattcaataaatttaaaaaat 42069781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 5950924 - 5950958
Alignment:
Q  188 atacatcaattattcaataaatttaaaaaatagtt 222  Q
    |||||| ||||||||||||||||||||||||||||    
T  5950924 atacattaattattcaataaatttaaaaaatagtt 5950958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 46742307 - 46742339
Alignment:
Q  186 atatacatcaattattcaataaatttaaaaaat 218  Q
    |||||||||||||||| ||||||||||||||||    
T  46742307 atatacatcaattatttaataaatttaaaaaat 46742339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 48781406 - 48781458
Alignment:
Q  188 atacatcaattattcaataaatttaaaaaatagttcttttttgcttataataa 240  Q
    |||| ||||||||||| ||||| |||||||||||| | |||| ||||||||||    
T  48781406 atacttcaattattcattaaatctaaaaaatagttttctttttcttataataa 48781458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 653300 - 653272
Alignment:
Q  188 atacatcaattattcaataaatttaaaaa 216  Q
    |||||||||||||||||||||||||||||    
T  653300 atacatcaattattcaataaatttaaaaa 653272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University