View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_209 (Length: 245)

Name: NF10201A_low_209
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_209
NF10201A_low_209
[»] scaffold0041 (1 HSPs)
scaffold0041 (11-226)||(78985-79200)
[»] chr7 (1 HSPs)
chr7 (11-226)||(40887084-40887299)
[»] chr1 (1 HSPs)
chr1 (104-185)||(28269615-28269696)
[»] chr4 (1 HSPs)
chr4 (108-173)||(21627833-21627898)
[»] chr2 (1 HSPs)
chr2 (108-184)||(40461699-40461775)


Alignment Details
Target: scaffold0041 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 78985 - 79200
Alignment:
Q  11 catagacctaaaaaacattgatgttacaattcagattataatcatggatggtgtattttatgtttctcaatattaaattttctgaattaacttatgcagg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  78985 catagacctaaaaaacattgatgttacaattcagattataatcatggatggtgtattttatgtttctcaatattgaattttctgaattaacttatgcagg 79084  T
Q  111 tggatatggaactctagaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaataattgacatgtccaattttcaggaa 210  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  79085 gggatatggaactctggaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaataattgacatgtccaattttcaggaa 79184  T
Q  211 tctatatcttttatgt 226  Q
    ||||||||||||||||    
T  79185 tctatatcttttatgt 79200  T

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Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 40887299 - 40887084
Alignment:
Q  11 catagacctaaaaaacattgatgttacaattcagattataatcatggatggtgtattttatgtttctcaatattaaattttctgaattaacttatgcagg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40887299 catagacctaaaaaacattgatgttacaattcagattataatcatggatggtgtattttatgtttctcaatattgaattttctgaattaacttatgcagg 40887200  T
Q  111 tggatatggaactctagaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaataattgacatgtccaattttcaggaa 210  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40887199 gggatatggaactctggaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaataattgacatgtccaattttcaggaa 40887100  T
Q  211 tctatatcttttatgt 226  Q
    ||||||||||||||||    
T  40887099 tctatatcttttatgt 40887084  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 28269696 - 28269615
Alignment:
Q  104 atgcaggtggatatggaactctagaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaat 185  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||    
T  28269696 atgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaaccggtaat 28269615  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 21627833 - 21627898
Alignment:
Q  108 aggtggatatggaactctagaggaacttcttgaagtcataacatgggctcaacttggaattcatga 173  Q
    |||||| ||||| || || |||||||||||||| |||||||| |||||||| ||||| || |||||    
T  21627833 aggtggctatgggacacttgaggaacttcttgaggtcataacttgggctcagcttggcatccatga 21627898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 40461775 - 40461699
Alignment:
Q  108 aggtggatatggaactctagaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaa 184  Q
    |||||| ||||| || || ||||| || ||||| || |||||||||||||||||||| || ||||| || |||||||    
T  40461775 aggtgggtatgggacacttgaggagctccttgaggtgataacatgggctcaacttggcatccatgataaaccggtaa 40461699  T

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