View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_212 (Length: 244)
Name: NF10201A_low_212
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_212 |
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| [»] scaffold0103 (1 HSPs) |
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| [»] scaffold0561 (1 HSPs) |
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| [»] scaffold0226 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 13486200 - 13486411
Alignment:
| Q |
21 |
ctaaagagccccttaatttctcaaactgaacaacatttggcaccttagttaaaatatctgcctgttgttgttcatttgctacatactcatggttcataac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13486200 |
ctaaagagccccttaatttctcaaactgaacaacatttggcaccttagttaaaatatctgcctgttgttgttcatttgctacatactcatggttcataac |
13486299 |
T |
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| Q |
121 |
ttaatattcaacatgttccttgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatagcactcaag |
220 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13486300 |
ttaatattcaacatgttccgtgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatagcactcaag |
13486399 |
T |
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| Q |
221 |
ttgttgcagtat |
232 |
Q |
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|| ||||||||| |
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| T |
13486400 |
tttttgcagtat |
13486411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 29710 - 29566
Alignment:
| Q |
21 |
ctaaagagccccttaatttctcaaactgaacaacatttggcaccttagttaaaatatctgcctgttgttgttcatttgctacatactcatggttcataac |
120 |
Q |
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|||| ||||||||||| |||||||| || |||||||||| |||||||| ||||||| || ||||||||||| ||| ||| ||||| |||||||||| |
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| T |
29710 |
ctaacgagccccttaacttctcaaattgcacaacatttgaaaccttagtgaaaatatatgttagttgttgttcagttgttacccactcaaggttcataac |
29611 |
T |
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| Q |
121 |
ttaatattcaacatgttccttgatgaaatgatgatgaatgtcaat |
165 |
Q |
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| T |
29610 |
tttaccttcaacatgttccgtgatgaaatgatgacaaatgtcaat |
29566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 22889274 - 22889211
Alignment:
| Q |
141 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaat |
204 |
Q |
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| T |
22889274 |
tgatgaaatgatgtcgaatgtcaatgtgctttgttctgctatgttgaataagattcttggaaat |
22889211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 20198649 - 20198601
Alignment:
| Q |
141 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaat |
189 |
Q |
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| T |
20198649 |
tgatgaaatgatgtcgaatgtcaatgtgctttgttttgctatgttgaat |
20198601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0561 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0561
Description:
Target: scaffold0561; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 8212 - 8287
Alignment:
| Q |
141 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatagcact |
216 |
Q |
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||||||||||||| |||| ||||||||||| ||||| ||||||||||| ||||||| ||||| || |||||||| |
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| T |
8212 |
tgatgaaatgatgtcgaatatcaatgtgctttgttctgctatgttgaataggattcttggaaatgttgatagcact |
8287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 15774 - 15703
Alignment:
| Q |
141 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatag |
212 |
Q |
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||||||||||||| |||||| |||||||||| ||||| ||||||||||| | ||||| |||||||| |||| |
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| T |
15774 |
tgatgaaatgatgttgaatgacaatgtgctttgttctgctatgttgaatagggttcttggaaatattgatag |
15703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 25168 - 25097
Alignment:
| Q |
141 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatag |
212 |
Q |
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||||||||||||| |||||| |||||||||| ||||| ||||||||||| | ||||| |||||||| |||| |
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| T |
25168 |
tgatgaaatgatgttgaatgacaatgtgctttgttctgctatgttgaatagggttcttggaaatattgatag |
25097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 18590421 - 18590488
Alignment:
| Q |
143 |
atgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaat |
210 |
Q |
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|||||||||||| |||||||||| ||||| | || |||||||||||||||||||| || |||||||| |
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| T |
18590421 |
atgaaatgatgacgaatgtcaatatgctttttccttctatgttgaatgagattcttggatatattaat |
18590488 |
T |
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