View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_214 (Length: 244)

Name: NF10201A_low_214
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_214
NF10201A_low_214
[»] chr8 (1 HSPs)
chr8 (28-244)||(11380728-11380941)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 244
Target Start/End: Original strand, 11380728 - 11380941
Alignment:
Q  28 gcattgacttaaacatgataatctatagttctacacatttaccttgcgtatagtatcaatgacatctttttcagctttgcgacgcttaacagtttcttga 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11380728 gcattgacttaaacatgataatctatagttctacacatttaccttgcgtatagtatcaatgacatctttttcagctttgcgacgcttaacagtttcttga 11380827  T
Q  128 tatgcatcccacctagccttcacagcctccgcaatagcctgttcaagttgatcatagacactcttgtccattcctctatcctgctagtagtgttcaatca 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||||||||||    
T  11380828 tatgcatcccacctagccttcacagcctccgcaatagcctgttcaagttgatcatagacactctcgtccattcctctatcctgc---tagtgttcaatca 11380924  T
Q  228 caatgtacaaaatgtta 244  Q
    |||||||||||||||||    
T  11380925 caatgtacaaaatgtta 11380941  T

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