View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_216 (Length: 243)
Name: NF10201A_low_216
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_216 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 38224709 - 38224922
Alignment:
| Q |
11 |
aataatatcaagactaaaggaaacaatacctggaccttagaatatggtaaattgttacacctctgaagtatgaatttgttctggctagcaaaattctatt |
110 |
Q |
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| T |
38224709 |
aataatatcaagactaaaggaaacaatacctggaccttagactatggtaaattgttccacctctgaagtatgaatttgttctggctagcaaaattctatt |
38224808 |
T |
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| Q |
111 |
tatagttatatacgtgtgtataaatttgagggaggacccaccactaaaccgaaagtgggatctgacacaatttctgaggtgttcagcatccattattttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38224809 |
tatagttatatacgtgtgtataaatttgagggaggacccaccactaaaccgaaagtgggatctgacacaatttctgaggtgttcagcatccattattttt |
38224908 |
T |
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| Q |
211 |
caattgctattagt |
224 |
Q |
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||||||| |||||| |
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| T |
38224909 |
caattgcgattagt |
38224922 |
T |
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