View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_220 (Length: 243)

Name: NF10201A_low_220
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_220
NF10201A_low_220
[»] chr1 (1 HSPs)
chr1 (7-243)||(12157640-12157876)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 12157876 - 12157640
Alignment:
7 tttggagttccaattttcaaaggtagaccaaaannnnnnnattgtctaacctattgctaacaaaatcaagctgaaattatctacttggaaatcatctttg 106  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
12157876 tttggagttccaattttcaaaggtagaccaaaatttgtttattgtctaacctattgctaacaaaaccaagctgaaattatctgcttggaaatcatctttg 12157777  T
107 ctgatttatggcccttctgtcaattctttgcttgtttttactttaaaagacattaagagatgtaaacttgagagattgtttatgaagttgctgctttaga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
12157776 ctgatttatggcccttctgtcaattctttgcttgtttttactttaaaagacattaagagatataaacttgagagattgtttatgaagttgctgctttaga 12157677  T
207 agctagcatgctagtcaaggttgttaaaacttaaagg 243  Q
    |||||||||||||||||||||||||||||||||||||    
12157676 agctagcatgctagtcaaggttgttaaaacttaaagg 12157640  T

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