View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_223 (Length: 242)
Name: NF10201A_low_223
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_223 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 39909115 - 39909339
Alignment:
| Q |
18 |
caattattatgcgacaaaacagttgattttaaaaaagagattctatactagctagcttcatgatcaaaagaatttatatggaccgatctatagaattatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39909115 |
caattattatgcgacaaaacagttgattttaaaaaagagattctatactagctagcttcatgatcaaaagaatttatatggaccgatctatagaattatt |
39909214 |
T |
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| Q |
118 |
cttcnnnnnnntaattataatcctcagtcaaaaaacttataatatgacgattttaattatggagggaaatcttttgaaatgctttcttgattccaaatct |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39909215 |
cttcaaaaaaataattataatcctcagtcaaaaaacttataatatgacgattttaattatggagggaaatcttttgaaatgctttcttgattccaaatct |
39909314 |
T |
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| Q |
218 |
aatggaaacttgacaacaatatata |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
39909315 |
aatggaaacttgacaacaatatata |
39909339 |
T |
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