View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF10201A_low_225 (Length: 242)
Name: NF10201A_low_225
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 24511188 - 24511365
Alignment:
| Q | 19 | atataatttaaaatattccaatatacaagcctttcccagcctcttcctcttacttttatattaatggttttctctaaagaatattataaatctcaatgac | 118 | Q |
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| T | 24511188 | atataatttaaaatattccaatatacaagcctttcccagcctcttcctcttatttttatattaattgttttctctaaagaatactataaatctcaatgac | 24511287 | T |
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| Q | 119 | cacgagacaatcaactttgatgtgaaatttattttacaacaaccaacaagccnnnnnnntaaacgagtttctaccttctttt | 200 | Q |
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| T | 24511288 | cacgagacaatcaactttgatgtgaaatttattttacaa----caacaagccaaaaaaataaacgagtttctaccttctttt | 24511365 | T |
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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 21935076 - 21935036
Alignment:
| Q | 28 | aaaatattccaatatacaagcctttcccagcctcttcctct | 68 | Q |
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| T | 21935076 | aaaatattccaatatataagccttgcccagcttcttcctct | 21935036 | T |
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