View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_228 (Length: 242)

Name: NF10201A_low_228
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_228
NF10201A_low_228
[»] chr4 (3 HSPs)
chr4 (7-234)||(49289509-49289736)
chr4 (7-234)||(49296460-49296687)
chr4 (7-195)||(49303232-49303417)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 49289736 - 49289509
Alignment:
Q  7 agttatacttgaagttttggtgtgttgtttgttgagttaataagctaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  49289736 agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggcttgttg 49289637  T
Q  107 ttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtccacttttacta 206  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  49289636 ttggaaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattgatcaattaagtccacttttacta 49289537  T
Q  207 ctagctagtacaaacgattattttcttc 234  Q
    ||||||||||||||||||||| ||||||    
T  49289536 ctagctagtacaaacgattatattcttc 49289509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 49296687 - 49296460
Alignment:
Q  7 agttatacttgaagttttggtgtgttgtttgttgagttaataagctaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  49296687 agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggcttgttg 49296588  T
Q  107 ttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtccacttttacta 206  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  49296587 ttggaaaagaaaagtagaaaagtggagaatcgtcgattagatgtttgggtcactttcaaaatcattgaaagtgattgatcaattaagtccacttttacta 49296488  T
Q  207 ctagctagtacaaacgattattttcttc 234  Q
    ||||||||||||||||||||| ||||||    
T  49296487 ctagctagtacaaacgattatattcttc 49296460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 49303417 - 49303232
Alignment:
Q  7 agttatacttgaagttttggtgtgttgtttgttgagttaataagctaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||   |    
T  49303417 agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggctt---g 49303321  T
Q  107 ttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtc 195  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  49303320 ttgggaaagaaaagtagaaaagtggagaatcgtccattagatatttgggtcattttcaaaatcgttgaaagtgattgatcaattaagtc 49303232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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