View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_229 (Length: 242)
Name: NF10201A_low_229
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_229 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 10505658 - 10505439
Alignment:
| Q |
20 |
tatttagcacgactcaatgaccaacgacaacacacgatgttggaatcaatggatagcatataatacattggggggtggataaaagcaatgctgcacatta |
119 |
Q |
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| T |
10505658 |
tatttggcacgactcaatgaccaacgacaacacaccatgttggaatcaatggatagcatacaatacattgggg---ggataaaagcaatgccgcacatta |
10505562 |
T |
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| Q |
120 |
ttcatccaaggattatatcaatgtcgcattttcgtgcttgtattggtgtcgtgccaacaagcaatttcct-nnnnnnntatctagcttaaaatttagacc |
218 |
Q |
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| T |
10505561 |
ttcatccaaggattatatcaatgtcgca-tttcgtgtttgtattggtgtcgtgccaacaagcaatttcctaaaataaatatctagcttaaaatttagacc |
10505463 |
T |
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| Q |
219 |
gtccaatgtcgatgcaacactcaa |
242 |
Q |
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| T |
10505462 |
gtccgatgtcgatgcatcactcaa |
10505439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 3450232 - 3450059
Alignment:
| Q |
20 |
tatttagcacgactcaatgaccaacgacaacacacgatgttggaatcaatggatagcatataatacattggggggtgg--ataaaagcaatgctgcacat |
117 |
Q |
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| T |
3450232 |
tatttagcacgattcaatgactgatgacaacacacgacgttggaatcaacggatagcatacactacatgggggagagagaataaaagcaatgctgcacat |
3450133 |
T |
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| Q |
118 |
tattcatccaaggattatatcaatgtcg--cattttcgtgcttgtattggtgtcgtgccaacaagcaatttcct |
189 |
Q |
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| T |
3450132 |
tattcatccaagggttatattagtgtcgtgcgttttcgtgtttgtattggtgtcgtgccaacaagcaatttcct |
3450059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 40891675 - 40891831
Alignment:
| Q |
24 |
tagcacgactcaatgaccaacgacaacacacgatgttggaatcaatggatagcatataatacattggggggtgga---taaaagcaatgctgcacattat |
120 |
Q |
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| T |
40891675 |
tagcaggattcaataacccacgacaacaaacgacgttgaaatcaacggatagcatacaatacatggggggggagagaataaaagcaatgttgcacattct |
40891774 |
T |
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| Q |
121 |
tcatccaaggattatatcaatgtc--gcattttcgtgcttgtattggtgtcgtgcca |
175 |
Q |
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| T |
40891775 |
tcatccaagggttatattggtgtcgtgcgttttcgtgcttgtattgttgtcgtgcca |
40891831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 34254465 - 34254374
Alignment:
| Q |
100 |
aaaagcaatgctgcacattattcatccaaggattatatcaatgtc--gcattttcgtgcttgtattggtgtcgtgccaacaagcaatttcct |
189 |
Q |
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| T |
34254465 |
aaaagcaatgctgcacatttttcatccaagggctatatcattgtcgtgtgtattcaggcttgtgttggtgtcgtgccaacaagcattttcct |
34254374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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