View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_240 (Length: 239)
Name: NF10201A_low_240
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_240 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 76 - 239
Target Start/End: Original strand, 50222720 - 50222883
Alignment:
| Q |
76 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
175 |
Q |
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| T |
50222720 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
50222819 |
T |
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| Q |
176 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattt |
239 |
Q |
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| T |
50222820 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattt |
50222883 |
T |
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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 50222574 - 50222640
Alignment:
| Q |
10 |
agagaatgaaaagttattcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga |
76 |
Q |
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| T |
50222574 |
agagaatgcaaagttattcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga |
50222640 |
T |
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