View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10201A_low_246 (Length: 235)

Name: NF10201A_low_246
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10201A_low_246
NF10201A_low_246
[»] chr3 (21 HSPs)
chr3 (1-221)||(33399482-33399702)
chr3 (12-221)||(29930326-29930535)
chr3 (12-221)||(29979480-29979689)
chr3 (1-221)||(14399502-14399722)
chr3 (12-212)||(46992149-46992349)
chr3 (12-221)||(7841909-7842118)
chr3 (12-221)||(36816410-36816619)
chr3 (14-212)||(13746624-13746822)
chr3 (12-210)||(48249772-48249970)
chr3 (12-221)||(21955132-21955341)
chr3 (12-212)||(77923-78123)
chr3 (14-212)||(9428736-9428934)
chr3 (14-212)||(30946545-30946743)
chr3 (12-221)||(7838554-7838763)
chr3 (14-212)||(3949703-3949901)
chr3 (14-212)||(6741847-6742045)
chr3 (14-212)||(8159886-8160084)
chr3 (14-212)||(16445580-16445778)
chr3 (12-173)||(6504897-6505058)
chr3 (64-176)||(25059880-25059992)
chr3 (14-157)||(50954233-50954376)
[»] chr1 (24 HSPs)
chr1 (1-212)||(26466173-26466384)
chr1 (1-235)||(32106523-32106754)
chr1 (1-212)||(16246657-16246865)
chr1 (28-210)||(25231276-25231458)
chr1 (12-221)||(21943258-21943467)
chr1 (12-221)||(50116657-50116866)
chr1 (1-221)||(7980106-7980326)
chr1 (12-221)||(37015872-37016081)
chr1 (1-210)||(38691844-38692053)
chr1 (12-221)||(51663216-51663425)
chr1 (1-221)||(46974111-46974331)
chr1 (14-212)||(29355591-29355789)
chr1 (14-212)||(41454797-41454995)
chr1 (103-212)||(5078984-5079093)
chr1 (14-212)||(20350416-20350614)
chr1 (14-212)||(44620006-44620204)
chr1 (65-221)||(13174792-13174948)
chr1 (14-212)||(3947364-3947562)
chr1 (14-212)||(3984073-3984271)
chr1 (14-212)||(13630376-13630574)
chr1 (14-212)||(38775018-38775216)
chr1 (14-212)||(44466542-44466740)
chr1 (119-199)||(39914002-39914082)
chr1 (103-210)||(12649484-12649589)
[»] chr5 (19 HSPs)
chr5 (10-223)||(20285965-20286178)
chr5 (28-212)||(23028463-23028654)
chr5 (19-171)||(13157978-13158130)
chr5 (1-188)||(20286455-20286643)
chr5 (12-221)||(18537230-18537439)
chr5 (103-212)||(7020783-7020892)
chr5 (12-210)||(25896006-25896204)
chr5 (103-212)||(27866748-27866857)
chr5 (103-212)||(34078829-34078938)
chr5 (40-212)||(13567005-13567177)
chr5 (12-199)||(1035466-1035653)
chr5 (12-210)||(7799911-7800109)
chr5 (65-221)||(4202833-4202989)
chr5 (14-212)||(11032355-11032553)
chr5 (14-212)||(37819780-37819978)
chr5 (14-168)||(38859137-38859291)
chr5 (119-212)||(28885311-28885404)
chr5 (127-221)||(1036424-1036518)
chr5 (128-212)||(25048472-25048556)
[»] chr4 (15 HSPs)
chr4 (31-212)||(6182653-6182834)
chr4 (12-212)||(18580231-18580431)
chr4 (12-221)||(4976713-4976922)
chr4 (14-212)||(9890982-9891180)
chr4 (12-221)||(4978848-4979057)
chr4 (65-221)||(11502517-11502673)
chr4 (111-210)||(19072562-19072661)
chr4 (103-212)||(3404839-3404948)
chr4 (12-209)||(21471752-21471949)
chr4 (103-212)||(41024248-41024357)
chr4 (102-174)||(4769178-4769250)
chr4 (12-221)||(51643392-51643603)
chr4 (14-212)||(49565367-49565565)
chr4 (12-87)||(17140547-17140622)
chr4 (131-211)||(38463741-38463821)
[»] chr2 (21 HSPs)
chr2 (11-223)||(17997064-17997276)
chr2 (12-221)||(41007874-41008083)
chr2 (35-221)||(436292-436478)
chr2 (12-174)||(12907433-12907595)
chr2 (12-213)||(11692716-11692917)
chr2 (12-221)||(43949176-43949385)
chr2 (14-212)||(7263992-7264190)
chr2 (103-212)||(3802469-3802578)
chr2 (103-212)||(27275263-27275372)
chr2 (12-212)||(28354805-28355005)
chr2 (12-221)||(24604983-24605192)
chr2 (12-221)||(24750616-24750825)
chr2 (103-174)||(45476407-45476478)
chr2 (14-212)||(212344-212542)
chr2 (14-212)||(10623357-10623555)
chr2 (103-221)||(34920676-34920794)
chr2 (103-212)||(5348216-5348325)
chr2 (103-212)||(41561061-41561170)
chr2 (14-212)||(39794930-39795128)
chr2 (14-174)||(38946723-38946883)
chr2 (12-85)||(34920802-34920875)
[»] chr7 (15 HSPs)
chr7 (12-221)||(8400544-8400753)
chr7 (1-221)||(43827500-43827720)
chr7 (12-221)||(47061841-47062050)
chr7 (14-212)||(18106348-18106546)
chr7 (1-198)||(21799959-21800156)
chr7 (14-212)||(617652-617850)
chr7 (14-212)||(30787499-30787697)
chr7 (14-212)||(43623038-43623236)
chr7 (14-212)||(45764339-45764537)
chr7 (103-212)||(15060662-15060771)
chr7 (64-199)||(20908433-20908568)
chr7 (14-173)||(42500367-42500526)
chr7 (113-211)||(3761964-3762062)
chr7 (128-212)||(16794516-16794600)
chr7 (119-212)||(8194183-8194276)
[»] chr8 (15 HSPs)
chr8 (12-221)||(7168858-7169067)
chr8 (12-221)||(35965639-35965848)
chr8 (12-221)||(39751922-39752131)
chr8 (12-212)||(45455334-45455534)
chr8 (64-211)||(14401676-14401825)
chr8 (65-199)||(22580914-22581048)
chr8 (12-221)||(43370725-43370934)
chr8 (12-221)||(43689065-43689274)
chr8 (35-157)||(2145948-2146070)
chr8 (14-212)||(7341039-7341237)
chr8 (14-212)||(8422759-8422957)
chr8 (14-212)||(30304513-30304711)
chr8 (14-212)||(32377811-32378009)
chr8 (14-212)||(32431768-32431966)
chr8 (103-212)||(1115821-1115930)
[»] scaffold0219 (1 HSPs)
scaffold0219 (12-221)||(17027-17236)
[»] chr6 (12 HSPs)
chr6 (12-210)||(18606954-18607152)
chr6 (14-212)||(28250856-28251054)
chr6 (16-210)||(24220128-24220324)
chr6 (65-174)||(31147333-31147442)
chr6 (12-174)||(7362137-7362299)
chr6 (35-221)||(29287842-29288028)
chr6 (14-212)||(1611654-1611852)
chr6 (103-221)||(21358241-21358359)
chr6 (103-221)||(23962223-23962341)
chr6 (64-179)||(34111598-34111713)
chr6 (12-87)||(35243561-35243636)
chr6 (14-87)||(13387722-13387795)
[»] scaffold0341 (1 HSPs)
scaffold0341 (103-212)||(16260-16369)
[»] scaffold0494 (1 HSPs)
scaffold0494 (14-212)||(1841-2039)
[»] scaffold0116 (1 HSPs)
scaffold0116 (12-221)||(12220-12429)
[»] scaffold0340 (1 HSPs)
scaffold0340 (12-174)||(111-273)
[»] scaffold0101 (1 HSPs)
scaffold0101 (14-212)||(33769-33967)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33399482 - 33399702
Alignment:
Q  1 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 100  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33399482 atgtaggtgtatgttcatggttcgtggatatcttagtaggcaagcaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 33399581  T
Q  101 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  33399582 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtacgtgacttgaccaagagtttggtgcttccaaaaaatattttgt 33399681  T
Q  201 taaatttgaagaccacaagac 221  Q
    ||||||||||||||| |||||    
T  33399682 taaatttgaagaccaaaagac 33399702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 29930326 - 29930535
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||   |    ||||||| |    
T  29930326 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatgatgccggctttagaagg 29930425  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||  ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| |||||||||| || ||||||||    
T  29930426 acacattcttggcggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagacatattttgatacatttgaag 29930525  T
Q  212 accacaagac 221  Q
    | || |||||    
T  29930526 aacaaaagac 29930535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 29979480 - 29979689
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | ||||   |    ||||||| |    
T  29979480 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatgatgccggctttagaagg 29979579  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||  ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| |||||||||| || ||||||||    
T  29979580 acacattcttggcggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagacatattttgatacatttgaag 29979679  T
Q  212 accacaagac 221  Q
    | || |||||    
T  29979680 aacaaaagac 29979689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14399502 - 14399722
Alignment:
Q  1 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 100  Q
    |||| ||||| |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||| ||||||||||||||||| |  ||| | |      
T  14399502 atgtgggtgtttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattctaaatggagttcacaaccatgccatggagccg 14399601  T
Q  101 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgt 200  Q
      ||||||| ||||||| ||||| |||||||||||| |||||| ||||||| ||||| ||||||||||||||||   | ||||||||| | ||||||||     
T  14399602 gctttagaaggacacattcttgccggtagattaaagaaggatgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttga 14399701  T
Q  201 taaatttgaagaccacaagac 221  Q
    || ||||||||| || |||||    
T  14399702 tacatttgaagaacaaaagac 14399722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 46992349 - 46992149
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  46992349 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaagg 46992250  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | || ||||| || ||||||||    
T  46992249 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaattttttgatacatttgaag 46992150  T
Q  212 a 212  Q
    |    
T  46992149 a 46992149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 7842118 - 7841909
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  7842118 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattgaacattcttaatggagttcacaaccatgcgatgaagccggctttagaagg 7842019  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| |||||  |||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  7842018 acacattcttgcctgtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 7841919  T
Q  212 accacaagac 221  Q
    | || |||||    
T  7841918 aacaaaagac 7841909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 36816619 - 36816410
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |    
T  36816619 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaagg 36816520  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  36816519 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 36816420  T
Q  212 accacaagac 221  Q
    | || |||||    
T  36816419 aacaaaagac 36816410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 13746822 - 13746624
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  13746822 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 13746723  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || |||||||||    
T  13746722 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaaga 13746624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 48249970 - 48249772
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    |||| || |    
T  48249970 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctttataagg 48249871  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaa 210  Q
    |||||| ||||| ||||||||||||||||| | |||||||  |||| ||||||||||||||||   | ||||||||| | |||||||| || |||||||    
T  48249870 acacattcttgccggtagattaaaggaggacgacaagaagactgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaa 48249772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 21955341 - 21955132
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| | ||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    | ||||| |    
T  21955341 tgttcatgattagtggatatcaaagtaagtaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctctagaagg 21955242  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    ||||||  |||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  21955241 acacattattgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 21955142  T
Q  212 accacaagac 221  Q
    | || |||||    
T  21955141 aacaaaagac 21955132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 78123 - 77923
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||   |||| | |    ||||||| |    
T  78123 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatttgatggagccggctttagaagg 78024  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    ||||||  |||| |||||||||||||| || | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  78023 acacattattgccggtagattaaaggaagacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 77924  T
Q  212 a 212  Q
    |    
T  77923 a 77923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 9428934 - 9428736
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  9428934 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 9428835  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| |||||   | ||||||||| | |||||||| || |||||||||    
T  9428834 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaaga 9428736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 30946743 - 30946545
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  30946743 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 30946644  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  30946643 acattcttgccggtagattaaaggaggatgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 30946545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 7838554 - 7838763
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||| ||||||||||||||| | |||| | |    ||||||| |    
T  7838554 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttagtggagttcacaaccatgcgatggagccggctttagaagg 7838653  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||| | |||||| |||||||||| | ||||||| ||||| ||||||||||||||||     ||||||||| | |||||||| || ||||||||    
T  7838654 acacattctttccggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaatatgcttccaagaaatattttgatacatttgaag 7838753  T
Q  212 accacaagac 221  Q
    | || |||||    
T  7838754 aacaaaagac 7838763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 3949703 - 3949901
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  3949703 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 3949802  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  3949803 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 3949901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 6741847 - 6742045
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  6741847 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 6741946  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  6741947 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 6742045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 8160084 - 8159886
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  8160084 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 8159985  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  8159984 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 8159886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 16445580 - 16445778
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  16445580 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 16445679  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||| | ||||||||||||||||| | ||||||| ||||| |||||||||| |||||   | ||||||||| | |||||||| || |||||||||    
T  16445680 acattctttccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaaga 16445778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 6505058 - 6504897
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  6505058 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaatg 6504959  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaaga 173  Q
    |||||| ||||| |||||| |||||||||| |  |||||| |||||  ||||||||||||||    
T  6504958 acacattcttgccggtagactaaaggaggacgaaaagaagattgtacatgacttgaccaaga 6504897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 25059992 - 25059880
Alignment:
Q  64 tattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgac 163  Q
    |||||||||||| |||||||||||  |||||| || |  ||||| | | ||||| |||||||  ||||||| | |||| | |||| || || ||||||||    
T  25059992 tattcttaatggtgttcacaaccataagatgttaccatatttagcagggcacattcttgcggaaagattaatgaaggacgacaaggagattatatgtgac 25059893  T
Q  164 ttgaccaagagtt 176  Q
    |||||||||||||    
T  25059892 ttgaccaagagtt 25059880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 50954233 - 50954376
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  50954233 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 50954332  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgta 157  Q
    |||| ||||| ||||||||||||||||| | ||||||| |||||    
T  50954333 acattcttgccggtagattaaaggaggacgacaagaagattgta 50954376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 26466384 - 26466173
Alignment:
Q  1 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 100  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| | |      
T  26466384 atgtaggtgtatgttcattgttcgtggatatcttagtaggcaaacaaatgattggagattaaacattcttaatggagttcacaaccatgagatggagccg 26466285  T
Q  101 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgt 200  Q
      ||||||| |||||||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||||| |  ||||||||||| | |||||||||    
T  26466284 gctttagaatgacacatgcttgcgggtagattaaaggaggatgataagaagattgtacgtgacttgaccaagactaaggtgcttccaagaaatattttgt 26466185  T
Q  201 taaatttgaaga 212  Q
    ||||||||||||    
T  26466184 taaatttgaaga 26466173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 32106754 - 32106523
Alignment:
Q  1 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 100  Q
    |||| |||| |||||||||||||||| ||||||||| ||| |||||||||||| |||||| |||||||||||  |||||||||| || |||||| | | |    
T  32106754 atgtgggtgaatgttcatggttcgtggatatcttagaaggtaaacaaatgattggagattgaatattcttaa--gagttcacaatcatgagatggagcca 32106657  T
Q  101 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgt 200  Q
    ||||||||| |||||||| |||| ||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||  |||| |||  ||||    
T  32106656 agtttagaaggacacatgattgctggtagattaaaggagaatgacaaaaagcttgtatgtgacttgaccaagagtttggtgctttgaaaaaata-gttgt 32106558  T
Q  201 taaatttgaagaccacaagacaaaattacaagaca 235  Q
    |||||||||||| || ||||||| ||| |||||||    
T  32106557 taaatttgaagagcaaaagacaagattgcaagaca 32106523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 16246865 - 16246657
Alignment:
Q  1 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 100  Q
    |||| ||||||||||||||||| ||||||||||  |||||||||||||||| | |||||| || ||| |||||| |||||||||||| | |||| | |      
T  16246865 atgtgggtgtatgttcatggttagtgaatatctgtgtaggcaaacaaatgaatggagattgaa-attgttaatgaagttcacaaccatgcgatggagccg 16246767  T
Q  101 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgt 200  Q
    | ||||||| ||||||||||| | ||||||||||| ||||||| ||||||| ||||| ||||||| ||||| ||   ||||| ||||| | |||||||||    
T  16246766 actttagaaggacacatgcttaccggtagattaaaagaggatgacaagaagattgtacgtgactt-accaaaagcaaggtgcatccaaga-atattttgt 16246669  T
Q  201 taaatttgaaga 212  Q
    ||||||||||||    
T  16246668 taaatttgaaga 16246657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 25231276 - 25231458
Alignment:
Q  28 atatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggt 127  Q
    |||| |||||||| |||||||||| | |||||| |||||| | ||||||||||||||||  |||| | | | |||||| ||| ||||||||||||| |||    
T  25231276 atatattagtagggaaacaaatgactggagattgaatattttcaatggagttcacaaccgtgagacgaagccaagtttggaaggacacatgcttgcaggt 25231375  T
Q  128 agattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaa 210  Q
    |||| || |||||||  ||||||| ||||| |||||||||||||  |||||||||||  || | |||||||||||||||||||    
T  25231376 agatcaagggaggataccaagaagattgtacgtgacttgaccaaatgtttggtgcttttaacaaatattttgttaaatttgaa 25231458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 21943467 - 21943258
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||| |||||| ||| |||||  |||||||||||||| || | | |||| || ||||| ||||||||||||||||| | |||| | |   |||||||| |    
T  21943467 tgtttatggttagtggatatcaaagtaggcaaacaaaggaatggggattgaacattctcaatggagttcacaaccatgggatggagccgggtttagaagg 21943368  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||| | ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| |||||||||||    
T  21943367 acacattcttaccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgataaatttgaag 21943268  T
Q  212 accacaagac 221  Q
    | || |||||    
T  21943267 aacaaaagac 21943258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 50116866 - 50116657
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||| ||| || | |||||| || |||||||||||||||||| |||| | |||| | |    ||||||| |    
T  50116866 tgttcatgattagtggatatcaaagtaagcaaataaaggaatggagattgaacattcttaatggagttcactaccatgcgatggagccggctttagaagg 50116767  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||  |||||||||||||||||| | ||||||||| | |||||||| || ||||||||    
T  50116766 acacattcttgccggtagattaaaggaggacgacaagaagattgttcgtgacttgaccaagagttagatgcttccaagaaatattttgatacatttgaag 50116667  T
Q  212 accacaagac 221  Q
    | || |||||    
T  50116666 aacaaaagac 50116657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7980326 - 7980106
Alignment:
Q  1 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 100  Q
    |||| ||||| |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| |  ||| |        
T  7980326 atgtgggtgtttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcaatgcagtcg 7980227  T
Q  101 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgt 200  Q
      ||||||| ||||||| ||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||||   | ||||||||| | ||||||||     
T  7980226 gctttagaaggacacattcttgccggtagattaaaggaggatgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttga 7980127  T
Q  201 taaatttgaagaccacaagac 221  Q
    || ||||||||| || |||||    
T  7980126 tacatttgaagaacaaaagac 7980106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 37015872 - 37016081
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  37015872 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagctggctttagaagg 37015971  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||  ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  37015972 acacattcttgccggtagattaaaggaggacgacaagaagattgtgcgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 37016071  T
Q  212 accacaagac 221  Q
    | || |||||    
T  37016072 aacaaaagac 37016081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 38692053 - 38691844
Alignment:
Q  1 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 100  Q
    |||| ||||| |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |      
T  38692053 atgtgggtgtttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccg 38691954  T
Q  101 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgt 200  Q
    | ||||||| ||||| | ||||| |||| |||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | ||||||||     
T  38691953 actttagaaggacacgttcttgccggtaaattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttga 38691854  T
Q  201 taaatttgaa 210  Q
    || |||||||    
T  38691853 tacatttgaa 38691844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 51663216 - 51663425
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || |||||||||  |||| ||||||||| || | | |||| || ||||||||||||| ||||||||| | |||| | |    ||||||| |    
T  51663216 tgttcatgattagtgaatatcaaagtaagcaaacaaaagaatggggattgaacattcttaatggagctcacaaccatgcgatgaagccggctttagaatg 51663315  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| | ||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  51663316 acacattcttgctggtagattaaaggaggaggacaagaagattgtacgcgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 51663415  T
Q  212 accacaagac 221  Q
    | || |||||    
T  51663416 aacaaaagac 51663425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 46974111 - 46974331
Alignment:
Q  1 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 100  Q
    |||| ||||| |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||| ||||||| | |||| | |      
T  46974111 atgtgggtgtttgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagtttacaaccatgcgatggagccg 46974210  T
Q  101 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgt 200  Q
    | ||||||| ||||||| ||||| |||| |||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | ||||||||     
T  46974211 actttagaaggacacattcttgccggtacattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttga 46974310  T
Q  201 taaatttgaagaccacaagac 221  Q
    || |||| |||| || |||||    
T  46974311 tacatttaaagaacaaaagac 46974331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 29355789 - 29355591
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  29355789 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 29355690  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || |||||||||    
T  29355689 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaaga 29355591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 41454797 - 41454995
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  41454797 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 41454896  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || |||||||||    
T  41454897 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaaga 41454995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 5078984 - 5079093
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| ||||||||||||||||| ||||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||  ||    
T  5078984 tttagaaggacacattcttgccggtagattaaaggaggacggcaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttaata 5079083  T
Q  203 aatttgaaga 212  Q
     |||||||||    
T  5079084 catttgaaga 5079093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 20350416 - 20350614
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | ||||||| |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  20350416 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattaaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 20350515  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  20350516 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 20350614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 44620204 - 44620006
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  44620204 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 44620105  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| |||||   | ||||||||| | |||||||| || |||||||||    
T  44620104 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaaga 44620006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 13174792 - 13174948
Alignment:
Q  65 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgact 164  Q
    ||||||||||||||||||||||| | |||| | |    ||||| | ||||||| || || ||||||||||||||||| | ||||||| ||||  ||||||    
T  13174792 attcttaatggagttcacaaccatgcgatggagccggctttaggaggacacattctcgctggtagattaaaggaggacgacaagaagattgttcgtgact 13174891  T
Q  165 tgaccaagagtttggtgcttccaaaacatattttgttaaatttgaagaccacaagac 221  Q
    ||||||||||   | ||||||||| | |||||||| || ||||||||| || |||||    
T  13174892 tgaccaagagcaagatgcttccaataaatattttgatacatttgaagaacaaaagac 13174948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 3947562 - 3947364
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  3947562 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 3947463  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  3947462 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 3947364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 3984073 - 3984271
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  3984073 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 3984172  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  3984173 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 3984271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 13630376 - 13630574
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  13630376 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 13630475  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||| | ||||||||||||||||| | ||||||| ||||| |||||||||| |||||   | ||||||||| | |||||||| || |||||||||    
T  13630476 acattctttccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaaga 13630574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 38775216 - 38775018
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  38775216 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 38775117  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  38775116 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 38775018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 44466542 - 44466740
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  44466542 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 44466641  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  44466642 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 44466740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 39914002 - 39914082
Alignment:
Q  119 cttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttg 199  Q
    |||||| | ||||||| | |||||| ||||||| ||||| ||||||||||||||||||||||||  | |||| ||||||||    
T  39914002 cttgcgagaagattaatgaaggatgacaagaagattgtacgtgacttgaccaagagtttggtgcaacaaaaaaatattttg 39914082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 210
Target Start/End: Complemental strand, 12649589 - 12649484
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| |||| |||||  ||| | | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| ||    
T  12649589 tttagaaggacacattcttgccggtaaattaa--gagcacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 12649492  T
Q  203 aatttgaa 210  Q
     |||||||    
T  12649491 catttgaa 12649484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 20285965 - 20286178
Alignment:
Q  10 tatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaa 109  Q
    ||||||||||||  ||| |||||||||||||||||||||||| | || | | || ||||||||||||||||||||||| | |||| | |    |||||||    
T  20285965 tatgttcatggtaagtggatatcttagtaggcaaacaaatgaatggaaactgaacattcttaatggagttcacaaccatgtgatggagccggctttagaa 20286064  T
Q  110 agacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttga 209  Q
     ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||  ||||||||||| | ||||||||||||||||||    
T  20286065 ggacacatgcttgcgggtagattaaaggaggatgacaagaagattgtatgtgacttaaccaagagtaaggtgcttccaagaaatattttgttaaatttga 20286164  T
Q  210 agaccacaagacaa 223  Q
    ||| || |||||||    
T  20286165 agagcaaaagacaa 20286178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 23028654 - 23028463
Alignment:
Q  28 atatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggt 127  Q
    ||||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||||| |||||| |   ||||||||||  ||||||||||||||||    
T  23028654 atatcttagtagggaaacaaatgattggagattgaatattattaatggagttcacaaccatgagatgaaggcaagtttagaagaacacatgcttgcgggt 23028555  T
Q  128 agattaaaggaggatggcaagaagcttgta-------tgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    ||||||| |||||||| ||||||| |||||        |||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||    
T  23028554 agattaagggaggatgacaagaagattgtacatgattggtgacttgaccaagagtttgatgctttcaaaaaatattttattaaatttgaaga 23028463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 13158130 - 13157978
Alignment:
Q  19 ggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatg 118  Q
    |||||||| |||||||| || |||||||||||||| |||||| || ||||||||||||||||||||||| || ||| |   || |||| || ||| ||||    
T  13158130 ggttcgtggatatcttaataagcaaacaaatgattggagattgaacattcttaatggagttcacaaccatgaaatggagtcaaatttaaaaggacgcatg 13158031  T
Q  119 cttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaa 171  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||| |||||    
T  13158030 cttgcgggtagattaaaggaggatgacaagaaacttgtatgtgacttcaccaa 13157978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 20286455 - 20286643
Alignment:
Q  1 atgtaggtgtatgttcatggttc-gtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacg 99  Q
    |||| ||||||||||||||| |  ||| |||||||||||||||||||||||| | ||   | || ||||||||||||||| ||||||| | |||| | |     
T  20286455 atgtgggtgtatgttcatgggtaagtggatatcttagtaggcaaacaaatgaatggaacctgaacattcttaatggagtttacaaccatgtgatggagcc 20286554  T
Q  100 aagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaa 188  Q
       ||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||  ||||||||||||||||  ||||| |||||    
T  20286555 ggctttagaaggacacatgcttgcgggtagattaaaggaggatgacaaaaagattgtacatgacttgaccaagagtaaggtgcatccaa 20286643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 18537439 - 18537230
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| | ||||||| || | | |||| || ||||||||||||||||||||||| | |||  | | |  ||||||| |    
T  18537439 tgttcatgattagtggatatcaaagtaagaaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgattgagccagctttagaagg 18537340  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||||||||||  | ||||||||| | |||||||| || ||||||||    
T  18537339 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagtgagatgcttccaagaaatattttgatacatttgaag 18537240  T
Q  212 accacaagac 221  Q
    | || |||||    
T  18537239 aacaaaagac 18537230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 7020892 - 7020783
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||||||||||||||||||||   | ||||||||| | |||||||| ||    
T  7020892 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtatgtgacttgaccaagaggaagatgcttccaagaaatattttgata 7020793  T
Q  203 aatttgaaga 212  Q
     |||||||||    
T  7020792 catttgaaga 7020783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 25896204 - 25896006
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |    
T  25896204 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaagg 25896105  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaa 210  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || |||||||    
T  25896104 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaa 25896006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 27866857 - 27866748
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| ||    
T  27866857 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 27866758  T
Q  203 aatttgaaga 212  Q
     |||||||||    
T  27866757 catttgaaga 27866748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 34078829 - 34078938
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| ||    
T  34078829 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 34078928  T
Q  203 aatttgaaga 212  Q
     |||||||||    
T  34078929 catttgaaga 34078938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 13567177 - 13567005
Alignment:
Q  40 gcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggag 139  Q
    ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | | |  ||||||| ||||||| ||||| |||||||||||| ||    
T  13567177 gcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccagctttagaaggacacattcttgccggtagattaaagaag 13567078  T
Q  140 gatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    || | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || |||||||||    
T  13567077 gacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaaga 13567005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 1035653 - 1035466
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| |  ||| | |    ||||||| |    
T  1035653 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgccatggagccggctttagaagg 1035554  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttg 199  Q
    |||||| ||||| ||||||||||||||||| | ||||||  ||||| ||||||||||||||||   | ||||||||| | ||||||||    
T  1035553 acacattcttgccggtagattaaaggaggacgacaagaatattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttg 1035466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 7800109 - 7799911
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | |  ||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  7800109 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatgggaattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaagg 7800010  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaa 210  Q
    |||||| ||||  |||||| |||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || |||||||    
T  7800009 acacattcttgtcggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaa 7799911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 4202989 - 4202833
Alignment:
Q  65 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgact 164  Q
    ||||||||||||||||||||||| | |||| | |    ||||||| ||||||  ||||| ||||||||||||||||| | ||||||| ||||| ||||||    
T  4202989 attcttaatggagttcacaaccatgcgatggagccggctttagaaggacacactcttgccggtagattaaaggaggacgacaagaagattgtacgtgact 4202890  T
Q  165 tgaccaagagtttggtgcttccaaaacatattttgttaaatttgaagaccacaagac 221  Q
    ||| ||||||   | |||||||||   |||||||| || ||||||||| || |||||    
T  4202889 tgatcaagagcaagatgcttccaagtaatattttgatacatttgaagaacaaaagac 4202833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 11032553 - 11032355
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  11032553 ttcatgattagtggatatcaaagtaagcaaacaaaagaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaatgac 11032454  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| || ||   | ||||||||| | |||||||| || |||||||||    
T  11032453 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaaaagcaagatgcttccaagaaatattttgatacatttgaaga 11032355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 37819978 - 37819780
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  37819978 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 37819879  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    ||||  |||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || |||||||||    
T  37819878 acattgttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaaga 37819780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 38859291 - 38859137
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | |||||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  38859291 ttcatgattagtggatatcaaagtaagcaaacaaaagaatggagattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 38859192  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgac 168  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||    
T  38859191 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgac 38859137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 28885404 - 28885311
Alignment:
Q  119 cttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| |||||   | ||||||||| | |||||||| || |||||||||    
T  28885404 cttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaaga 28885311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 1036424 - 1036518
Alignment:
Q  127 tagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaagaccacaagac 221  Q
    ||||||||||||||| | ||||||  ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||| || |||||    
T  1036424 tagattaaaggaggacgacaagaatattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaacaaaagac 1036518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 25048472 - 25048556
Alignment:
Q  128 agattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    ||||||| |||||| | ||||||| |||||| |||||||||||| |||| | ||   ||| || |||||||| ||||||||||||    
T  25048472 agattaatggaggacgacaagaagattgtatatgacttgaccaatagttcgttgaaaccataaaatattttgataaatttgaaga 25048556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 6182653 - 6182834
Alignment:
Q  31 tcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtaga 130  Q
    |||||||||| ||||||| |||| |||||| ||||||||| |||||||||||||||| |||||| | | |||||||||| |||| ||||||||  ||| |    
T  6182653 tcttagtagggaaacaaacgattggagattgaatattcttgatggagttcacaaccatgagatgaagccaagtttagaaggacatatgcttgcaagtata 6182752  T
Q  131 ttaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||| | || ||||||  |||||  ||||||||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  6182753 ttaagggatggtgacaagaaaattgtacatgacttgaccaagagtttggtgctttcaaaaaatattttgttaaattttaaga 6182834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 18580431 - 18580231
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || |   ||||||| ||||||||||||||||||||||| |  ||| | |    ||||||| |    
T  18580431 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattaaacattcttaatggagttcacaaccatgcaatgaagccggctttagaatg 18580332  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| | ||||||||||||||| | ||||||| ||||||||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  18580331 acacattcttgccgatagattaaaggaggacgacaagaagattgtatgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 18580232  T
Q  212 a 212  Q
    |    
T  18580231 a 18580231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 4976713 - 4976922
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||  |||||| | |||| | |    |||||||||    
T  4976713 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagtttgcaaccatgcgatggagccggctttagaaag 4976812  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| |||||| |||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  4976813 acacattcttgccggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 4976912  T
Q  212 accacaagac 221  Q
    | || |||||    
T  4976913 aacaaaagac 4976922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 9890982 - 9891180
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  9890982 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 9891081  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| |||||   | ||||||||| | |||||||| || |||||||||    
T  9891082 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaaga 9891180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 4979057 - 4978848
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||| |||||| | |||| | |  | ||||||| |    
T  4979057 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcccaaccatgcgatggagccgactttagaagg 4978958  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| |||||  | ||| ||||||| || | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  4978957 acacattcttgccagcagactaaaggatgacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 4978858  T
Q  212 accacaagac 221  Q
    | || |||||    
T  4978857 aacaaaagac 4978848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 11502517 - 11502673
Alignment:
Q  65 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgact 164  Q
    ||||||||||||||||||| ||| | |||| | |    ||||||| ||||||| | ||| |||||||||||||| || | ||||||| ||||| ||||||    
T  11502517 attcttaatggagttcacacccatgcgatggagccggctttagaaggacacattcatgccggtagattaaaggaagacgacaagaagattgtacgtgact 11502616  T
Q  165 tgaccaagagtttggtgcttccaaaacatattttgttaaatttgaagaccacaagac 221  Q
    ||||||||||   | ||||||||| | |||||||| || ||||||||| || |||||    
T  11502617 tgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaacaaaagac 11502673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 19072661 - 19072562
Alignment:
Q  111 gacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaa 210  Q
    ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || |||||||    
T  19072661 gacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaa 19072562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 3404839 - 3404948
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| |||||  |||||||||||||||| | ||||||| ||||| |||||||||| |||||   | ||||||||| | |||||||| ||    
T  3404839 tttagaaggacacattcttgccagtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgata 3404938  T
Q  203 aatttgaaga 212  Q
     |||||||||    
T  3404939 catttgaaga 3404948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 21471752 - 21471949
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| |   || |||| ||||    
T  21471752 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatacaatggagacaactttaaaaag 21471851  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttga 209  Q
    |||||| ||||  | |||| |||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||    
T  21471852 acacattcttgaagatagaataaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttga 21471949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 41024248 - 41024357
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| ||||||||||||||||| |  |||||| ||||| |||||||||| |||||   | ||||||||| | |||||||| ||    
T  41024248 tttagaaggacacattcttgcaggtagattaaaggaggacgaaaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgata 41024347  T
Q  203 aatttgaaga 212  Q
     |||||||||    
T  41024348 catttgaaga 41024357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 4769178 - 4769250
Alignment:
Q  102 gtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 174  Q
    |||||||| ||||||| ||| | ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  4769178 gtttagaaggacacattcttaccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 4769250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 51643603 - 51643392
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagtt-cacaaccaagagatgtaacgaag-tttagaa 109  Q
    |||||||| || ||| |||||  |||| ||||||||| || | |||||| || ||||||||||||||| ||||| || | |||| | |   | |||| ||    
T  51643603 tgttcatgattagtggatatcaaagtaagcaaacaaaggaattgagattgaacattcttaatggagtttcacaaacatgcgatggagcccggctttataa 51643504  T
Q  110 agacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttga 209  Q
     ||||||| |||||  |||||||||||||||| | ||||||| ||||| ||||||||||||||||     ||||| ||||| |||||||| || ||||||    
T  51643503 ggacacattcttgccagtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaaaatgctttcaaaaaatattttgatacatttga 51643404  T
Q  210 agaccacaagac 221  Q
    ||| || |||||    
T  51643403 agaacaaaagac 51643392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 49565565 - 49565367
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  49565565 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 49565466  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| | ||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  49565465 acattcttgccgatagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 49565367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 17140547 - 17140622
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaacca 87  Q
    ||||||||||| ||| |||||  |||||||||||||| || | | |||| || |||||||||||||||||||||||    
T  17140547 tgttcatggttagtggatatcaaagtaggcaaacaaaggaatggggattgaacattcttaatggagttcacaacca 17140622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 38463821 - 38463741
Alignment:
Q  131 ttaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    ||||||||||| | ||||||| ||| | ||||||||||||||||   | ||||||||||| |||||||| || ||||||||    
T  38463821 ttaaaggaggacgacaagaagattgcacgtgacttgaccaagagcaagatgcttccaaaaaatattttgatacatttgaag 38463741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 17997276 - 17997064
Alignment:
Q  11 atgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaa 110  Q
    ||||||| |||| ||| |||||||||||| |||||||| || | |||||| || |||||| ||| ||||| |||||| | |||| | |    |||||||     
T  17997276 atgttcaaggttagtggatatcttagtagacaaacaaaggaatggagattgaacattcttcatgaagttcgcaaccatgcgatggagccggctttagaag 17997177  T
Q  111 gacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaa 210  Q
    ||||||||||||| |||||||||||||||||||  |||||| ||||| ||||||||||||||||   ||||||||||| | |||||||| ||||||||||    
T  17997176 gacacatgcttgctggtagattaaaggaggatgataagaagattgtacgtgacttgaccaagagcaaggtgcttccaagaaatattttgataaatttgaa 17997077  T
Q  211 gaccacaagacaa 223  Q
    || || |||||||    
T  17997076 gagcaaaagacaa 17997064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 41008083 - 41007874
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | |||||| |    ||||||| |    
T  41008083 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattgaacattcttaatggagttcacaaccatgcgatgtagccggctttagaatg 41007984  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  41007983 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 41007884  T
Q  212 accacaagac 221  Q
    | || |||||    
T  41007883 aacaaaagac 41007874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 221
Target Start/End: Original strand, 436292 - 436478
Alignment:
Q  35 agtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaa 134  Q
    |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    ||||||| ||||||| ||||| ||||||||||    
T  436292 agtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaaggacacattcttgccggtagattaa 436391  T
Q  135 aggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaagaccacaagac 221  Q
    ||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||| || |||||    
T  436392 aggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaacaaaagac 436478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 12907595 - 12907433
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | |||||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  12907595 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggagattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaagg 12907496  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 174  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  12907495 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 12907433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 11692917 - 11692716
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | |||  | |  | ||||||| |    
T  11692917 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattgaacattcttaatggagttcacaaccatgtgatcgagccgactttagaagg 11692818  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  11692817 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 11692718  T
Q  212 ac 213  Q
    ||    
T  11692717 ac 11692716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 43949385 - 43949176
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||| ||||||||||||||||||| | || | | |    ||||||| |    
T  43949385 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattattaatggagttcacaaccatgcgaaggagccggctttagaagg 43949286  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||||||||| ||||||||| |||||  |||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  43949285 acacattcttgccggtagattaaaggaggacggcaagaagattgtacatgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 43949186  T
Q  212 accacaagac 221  Q
    | || |||||    
T  43949185 aacaaaagac 43949176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 7263992 - 7264190
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| |||    ||||||| |||    
T  7263992 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatctcatggaaccggctttagaaggac 7264091  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | || |||||| | |||||||| || |||||||||    
T  7264092 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatggttccaagaaatattttgatacatttgaaga 7264190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 3802578 - 3802469
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| ||    
T  3802578 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaataaatattttgata 3802479  T
Q  203 aatttgaaga 212  Q
     |||||||||    
T  3802478 catttgaaga 3802469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 27275372 - 27275263
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| ||    
T  27275372 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 27275273  T
Q  203 aatttgaaga 212  Q
     |||||||||    
T  27275272 catttgaaga 27275263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 28355005 - 28354805
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||| ||||| | |||| | |    ||||||| |    
T  28355005 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcataaccatgcgatggagcctgctttagaatg 28354906  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| |||||| |||||||||| | ||||||| ||||| |||||||||||| |||   | ||||||||| | |||||||| || ||||||||    
T  28354905 acacattcttgctggtagactaaaggaggacgacaagaagattgtacgtgacttgaccatgagcaagatgcttccaagaaatattttgatacatttgaag 28354806  T
Q  212 a 212  Q
    |    
T  28354805 a 28354805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 24605192 - 24604983
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    |||||||      
T  24605192 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaagt 24605093  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||  |||||| |||||||||| | ||||||  ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  24605092 acacattcttgtcggtagactaaaggaggacgacaagaaaattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 24604993  T
Q  212 accacaagac 221  Q
    | || |||||    
T  24604992 aacaaaagac 24604983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 24750616 - 24750825
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |    
T  24750616 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggatttagaagg 24750715  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||||||||||| ||||||| |||||  ||| |||||| ||||   | ||||||||| | |||||||| || ||||||||    
T  24750716 acacattcttgccggtagattaaaggaggatgacaagaagattgtacatgaattgaccgagagcaagatgcttccaagaaatattttgatacatttgaag 24750815  T
Q  212 accacaagac 221  Q
    | || |||||    
T  24750816 aacaaaagac 24750825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 45476407 - 45476478
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 174  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  45476407 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagag 45476478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 212542 - 212344
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  212542 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 212443  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  212442 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 212344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 10623555 - 10623357
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  10623555 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 10623456  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  10623455 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 10623357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 34920794 - 34920676
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||| | |||| |||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| ||    
T  34920794 tttagaaggacacattcttaccggtaaattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 34920695  T
Q  203 aatttgaagaccacaagac 221  Q
     ||||||||| || |||||    
T  34920694 catttgaagaacaaaagac 34920676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 5348216 - 5348325
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| ||    
T  5348216 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 5348315  T
Q  203 aatttgaaga 212  Q
     | |||||||    
T  5348316 cacttgaaga 5348325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 41561061 - 41561170
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| ||    
T  41561061 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 41561160  T
Q  203 aatttgaaga 212  Q
     | |||||||    
T  41561161 cacttgaaga 41561170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 39794930 - 39795128
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| | |    
T  39794930 ttcatgattagtggatatcaaagtaagcaaacaaaagaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaagggc 39795029  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| || ||   | ||||||||| | |||||||| || |||||||||    
T  39795030 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaaaagcaagatgcttccaagaaatattttgatacatttgaaga 39795128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 38946723 - 38946883
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  38946723 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 38946822  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 174  Q
    |||| ||||| |||||||||||||||||   ||||||| | ||| ||||||||||||||||    
T  38946823 acattcttgccggtagattaaaggaggacaacaagaagatcgtacgtgacttgaccaagag 38946883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 34920875 - 34920802
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaac 85  Q
    |||||||| || ||| |||||  |||| ||||||||| || | |||||| || |||||||||||||||||||||    
T  34920875 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggagattgaacattcttaatggagttcacaac 34920802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 8400544 - 8400753
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    ||||||||||| ||| ||||||||||||||||||||| || | | |||| || ||| | ||||||||||||||||| | |||| | |    ||||||| |    
T  8400544 tgttcatggttagtggatatcttagtaggcaaacaaaagaatggggattgaacattttcaatggagttcacaaccatgcgatggagccggctttagaagg 8400643  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| |||| |||||||||||||| ||||||| ||||| ||||||||||||||||   | || | |||||| |||||||| |||||||||||    
T  8400644 acacattcttgctggtacattaaaggaggatgacaagaagattgtaggtgacttgaccaagagcaagatgttaccaaaaaatattttgataaatttgaag 8400743  T
Q  212 accacaagac 221  Q
    | || |||||    
T  8400744 aacaaaagac 8400753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43827720 - 43827500
Alignment:
Q  1 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 100  Q
    |||| ||||| ||||||||||| ||| |||||||||||| |||||||| || | | |||| || ||||||||||||||||||||||| | || | | | |    
T  43827720 atgtgggtgtttgttcatggttagtggatatcttagtagacaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgaaggagcca 43827621  T
Q  101 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgt 200  Q
      ||||||| ||||||| ||| | ||||||||||||||||| |  |||||| ||||| |||||||||||||| |   | ||||||||| | ||||||||     
T  43827620 gctttagaatgacacattcttaccggtagattaaaggaggacgaaaagaagattgtacgtgacttgaccaagtgcaagatgcttccaagaaatattttga 43827521  T
Q  201 taaatttgaagaccacaagac 221  Q
    |||||||||||| || |||||    
T  43827520 taaatttgaagaacaaaagac 43827500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 47061841 - 47062050
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | |||| | |  | ||| ||| |    
T  47061841 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatgaggattgaacattcttaatggagttcacaaccatgcgatggagccgacttttgaagg 47061940  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||||||||| | ||| ||| ||||||||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  47061941 acacattcttgccggtagattaaaggaggacgacaaaaagattgtatgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 47062040  T
Q  212 accacaagac 221  Q
    | || |||||    
T  47062041 aacaaaagac 47062050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 18106348 - 18106546
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  18106348 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 18106447  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| |||||   | ||||||||| | |||||||| || |||||||||    
T  18106448 acattcttgcaggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaagagcaagatgcttccaagaaatattttgatacatttgaaga 18106546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 21799959 - 21800156
Alignment:
Q  1 atgtaggtgtatgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacga 100  Q
    |||| |||| |||||||||||| ||| ||||||||||||| |||||||  | | |||||| || ||| ||||||||||||||||||| | |||| |        
T  21799959 atgtgggtgcatgttcatggttagtggatatcttagtaggaaaacaaagcaatggagattgaacattgttaatggagttcacaaccatgcgatggagtcg 21800058  T
Q  101 agtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatatttt 198  Q
      ||||||| |||||||| |||  ||||||||||||||||||  ||||||  || || ||||||| | ||||||   ||||| ||||||| |||||||    
T  21800059 gctttagaaggacacatgtttgtcggtagattaaaggaggataacaagaaaattatacgtgacttaatcaagagcaaggtgcatccaaaaaatatttt 21800156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 617850 - 617652
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  617850 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 617751  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  617750 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 617652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 30787499 - 30787697
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  30787499 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 30787598  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  30787599 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 30787697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 43623236 - 43623038
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  43623236 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 43623137  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  43623136 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 43623038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 45764339 - 45764537
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  45764339 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaatgac 45764438  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  45764439 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 45764537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 15060662 - 15060771
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| |||||   | |||||||||   |||||||| ||    
T  15060662 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtaagtgacttgacaaagagcaagatgcttccaaggaatattttgata 15060761  T
Q  203 aatttgaaga 212  Q
     |||||||||    
T  15060762 catttgaaga 15060771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 20908568 - 20908433
Alignment:
Q  64 tattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgac 163  Q
    |||||||||||||||||||||||| |||| |     ||  |||||| | ||||| ||||| || ||||||| |||||||| ||||||| ||||  |||||    
T  20908568 tattcttaatggagttcacaaccatgagacgacggcaatgttagaagggcacattcttgcaggaagattaagggaggatgacaagaagattgtgcgtgac 20908469  T
Q  164 ttgaccaagagtttggtgcttccaaaacatattttg 199  Q
    || ||||||||||||||||  | |||| ||||||||    
T  20908468 tttaccaagagtttggtgcaacaaaaaaatattttg 20908433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 42500367 - 42500526
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | |||||| || |||||||||||||||||||||||    ||| | |    ||||||| ||     
T  42500367 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggagattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggaa 42500466  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaaga 173  Q
    |||| ||||| ||||||||||||||||| | ||||||| ||||| |||||||||| ||||    
T  42500467 acattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgacaaaga 42500526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 3761964 - 3762062
Alignment:
Q  113 cacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||||||| ||| ||||||| ||| |||| ||| ||| || || || ||||||||||||||||| |||  |||||| |||||||| | |||||||||    
T  3761964 cacatgcttgagggaagattaagggaagatgacaaaaagattctaggtaacttgaccaagagtttgatgcagccaaaaaatattttgatgaatttgaag 3762062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 16794600 - 16794516
Alignment:
Q  128 agattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    ||||||| |||||| | ||||||| |||||  |||||||||||| |||||||||   |||||| ||||||||  |||||||||||    
T  16794600 agattaatggaggacgacaagaagattgtacatgacttgaccaatagtttggtgaaaccaaaaaatattttgacaaatttgaaga 16794516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 8194276 - 8194183
Alignment:
Q  119 cttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||||||| ||||||| |||||| | ||||||| |||||  |||||||| ||| |||| ||||   |||||| ||||||||  |||||||||||    
T  8194276 cttgcgggaagattaatggaggacgacaagaagattgtacatgacttgagcaatagttcggtgaaaccaaaaaatattttgacaaatttgaaga 8194183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 7168858 - 7169067
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    ||||||||||| ||| |||||  |||||||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |  | ||||||| |    
T  7168858 tgttcatggttagtggatatcaaagtaggcaaacaaaggagtggggattgaacattcttaatggagttcacaaccatgcgatggagccgactttagaagg 7168957  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    | |||| |||||  |||||||||||||||| | ||||| | ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  7168958 atacattcttgctagtagattaaaggaggacgacaagatgattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 7169057  T
Q  212 accacaagac 221  Q
    | || |||||    
T  7169058 aacaaaagac 7169067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 35965848 - 35965639
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  35965848 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaagg 35965749  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  35965748 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 35965649  T
Q  212 accacaagac 221  Q
    | || |||||    
T  35965648 aacaaaagac 35965639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 39752131 - 39751922
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| |||||||||||| | | |||| || ||||||||||||||||||||||| |  ||| |||    ||||||| |    
T  39752131 tgttcatgattggtggatatcaaagtaagcaaacaaatgaatggggattgaacattcttaatggagttcacaaccatgcaatggaaccggctttagaatg 39752032  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    ||| ||   ||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  39752031 acatatttatgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 39751932  T
Q  212 accacaagac 221  Q
    | || |||||    
T  39751931 aacaaaagac 39751922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 45455334 - 45455534
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | ||||  | ||||||||||||||| ||||||| | |||| | |  | ||||||| |    
T  45455334 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattggacattcttaatggagttaacaaccatgcgatggagccgactttagaagg 45455433  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||     ||||||||| | |||||||| || ||||||||    
T  45455434 acacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaaaatgcttccaagaaatattttgatacatttgaag 45455533  T
Q  212 a 212  Q
    |    
T  45455534 a 45455534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 14401825 - 14401676
Alignment:
Q  64 tattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgta--tgtg 161  Q
    |||||||||||||||||||||||| ||  ||   | |||||||||| | ||||| ||||| || ||||||| ||| |||| ||||||| |||||  | ||    
T  14401825 tattcttaatggagttcacaaccatgaattggtgccaagtttagaatggcacattcttgcaggaagattaagggatgatgacaagaagattgtacatatg 14401726  T
Q  162 acttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||||||||||||||||||  |||||| |||||||| | |||||||||    
T  14401725 acttgaccaagagtttggtgccaccaaaaaatattttgatgaatttgaag 14401676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 22580914 - 22581048
Alignment:
Q  65 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgact 164  Q
    ||||||||||||||| ||||||| | |||| | |  | ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||    
T  22580914 attcttaatggagtttacaaccatgcgatggagccgactttagaaggacacattcttgccggtagattaaaggaggacgacaagaagattgtacgtgact 22581013  T
Q  165 tgaccaagagtttggtgcttccaaaacatattttg 199  Q
    ||||||||||   | ||||||||| | ||||||||    
T  22581014 tgaccaagagcaagatgcttccaagaaatattttg 22581048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 43370725 - 43370934
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | | || || ||||||||||||||||||||||| | |||| |      ||||||| |    
T  43370725 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggtttgaacattcttaatggagttcacaaccatgcgatggagtcggctttagaagg 43370824  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| |||||| |||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  43370825 acacattcttgccggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 43370924  T
Q  212 accacaagac 221  Q
    | || |||||    
T  43370925 aacaaaagac 43370934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 43689274 - 43689065
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| |      ||||||| |    
T  43689274 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggatttaacattcttaatggagttcacaaccatgcgatggagtcggctttagaagg 43689175  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| ||||||||||| ||||| | ||||||| ||||| ||||||||||||||||   | |||||| || | |||||||| || ||||||||    
T  43689174 acacattcttgccggtagattaaaagaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttcgaagaaatattttgatacatttgaag 43689075  T
Q  212 accacaagac 221  Q
    | || |||||    
T  43689074 aacaaaagac 43689065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 2146070 - 2145948
Alignment:
Q  35 agtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaa 134  Q
    |||| |||||||||||| | |||||| || ||| ||||||||||||||||||| | |||| | |  | ||||||| |||| || ||||| ||||||||||    
T  2146070 agtaagcaaacaaatgaatggagattgaacatttttaatggagttcacaaccatgcgatggagccgactttagaaggacatattcttgccggtagattaa 2145971  T
Q  135 aggaggatggcaagaagcttgta 157  Q
    ||||||| | ||||||| |||||    
T  2145970 aggaggacgacaagaagattgta 2145948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 7341039 - 7341237
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  7341039 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 7341138  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  7341139 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 7341237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 8422957 - 8422759
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | ||||||| ||||||||||||||||||||| |    ||| | |    ||||||| |||    
T  8422957 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattaaacattcttaatggagttcacaactatcccatggagccggctttagaatgac 8422858  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  8422857 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 8422759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 30304711 - 30304513
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  30304711 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 30304612  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  30304611 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 30304513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 32378009 - 32377811
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  32378009 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 32377910  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  32377909 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 32377811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 32431966 - 32431768
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  32431966 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 32431867  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  32431866 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 32431768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 1115821 - 1115930
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| ||    
T  1115821 tttagaaggacacattcttgccggtagattaaaggaggacgacaagaagatagtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 1115920  T
Q  203 aatttgaaga 212  Q
     | |||||||    
T  1115921 caattgaaga 1115930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 17027 - 17236
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  17027 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatagggattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaagg 17126  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||||| |||||| |||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  17127 acacattcttgccggtagactaaaggaggacgacaagaagattgtaagtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaag 17226  T
Q  212 accacaagac 221  Q
    | || |||||    
T  17227 aacaaaagac 17236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 18606954 - 18607152
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |  | ||||||| |    
T  18606954 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagccgactttagaagg 18607053  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaa 210  Q
    |||||| ||||  | ||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || |||||||    
T  18607054 acacattcttgtcgatagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaa 18607152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 28250856 - 28251054
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | | |  ||||||| |||    
T  28250856 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccagctttagaaggac 28250955  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| | ||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || |||||||||    
T  28250956 acattcttgccgatagattaaaggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaaga 28251054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 24220128 - 24220324
Alignment:
Q  16 catggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacac 115  Q
    ||||||| ||| ||||||||||||| |||||||||| | | |||| || |||||||||| |||||||||||| | |||| |      ||||||| |||||    
T  24220128 catggttagtggatatcttagtaggaaaacaaatgaatggggattgaaaattcttaatgcagttcacaaccatgcgatggagtcggctttagaaggacac 24220227  T
Q  116 atgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag--tttggtgcttccaaaacatattttgttaaatttgaa 210  Q
    || ||||  ||||||||||||||||| | ||||||  || || ||||||||||||||||  |  | ||||||||| | |||||||| ||||||||||    
T  24220228 attcttgtcggtagattaaaggaggacgacaagaaaattatacgtgacttgaccaagagcataagatgcttccaagaaatattttgataaatttgaa 24220324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 31147333 - 31147442
Alignment:
Q  65 attcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgact 164  Q
    ||||||||||||||||||||||| | |||| | |  | ||||||| ||||||| ||||| ||||||||||||||| ||| ||||||| ||||| ||||||    
T  31147333 attcttaatggagttcacaaccatgcgatggagccgactttagaaggacacattcttgccggtagattaaaggagaatgacaagaagattgtacgtgact 31147432  T
Q  165 tgaccaagag 174  Q
    ||| ||||||    
T  31147433 tgatcaagag 31147442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 7362137 - 7362299
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || |   |||| || ||||||||||||||||||||||| | |||| |    | ||||||| |    
T  7362137 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatgtggattgaacattcttaatggagttcacaaccatgcgatggagtcgactttagaatg 7362236  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 174  Q
    |||||| ||||| |||||| |||||||||| | ||||||| ||||| ||||||||||||||||    
T  7362237 acacattcttgccggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaagag 7362299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 29288028 - 29287842
Alignment:
Q  35 agtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaa 134  Q
    |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| |      |||| || ||||||| ||||| |||||| |||    
T  29288028 agtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatgcgatggagtcggctttataaggacacattcttgccggtagactaa 29287929  T
Q  135 aggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaagaccacaagac 221  Q
    ||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||| || |||||    
T  29287928 aggaggacgacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaagaacaaaagac 29287842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 1611852 - 1611654
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  1611852 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 1611753  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  1611752 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 1611654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 21358359 - 21358241
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| | ||||||||||||||| | ||||||| |||||  |||||||||||||||   | ||||||||| | |||||||| ||    
T  21358359 tttagaaggacacattcttgccgatagattaaaggaggacgacaagaagattgtacatgacttgaccaagagcaagatgcttccaagaaatattttgata 21358260  T
Q  203 aatttgaagaccacaagac 221  Q
     ||||||||| || |||||    
T  21358259 catttgaagaacaaaagac 21358241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 23962341 - 23962223
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| | ||||||||||||||| | ||||||| |||||  |||||||||||||||   | ||||||||| | |||||||| ||    
T  23962341 tttagaaggacacattcttgccgatagattaaaggaggacgacaagaagattgtacatgacttgaccaagagcaagatgcttccaagaaatattttgata 23962242  T
Q  203 aatttgaagaccacaagac 221  Q
     ||||||||| || |||||    
T  23962241 catttgaagaacaaaagac 23962223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 34111713 - 34111598
Alignment:
Q  64 tattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgac 163  Q
    |||||||||||||||||||||||| ||||||   | ||  |||||| |  | || ||||| || ||||||||||| |||| | ||||| ||||| |||||    
T  34111713 tattcttaatggagttcacaaccatgagatggcgccaaagttagaagggaaaattcttgcaggaagattaaaggaagatgactagaagattgtacgtgac 34111614  T
Q  164 ttgaccaagagtttgg 179  Q
    ||||||||||||||||    
T  34111613 ttgaccaagagtttgg 34111598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 35243561 - 35243636
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaacca 87  Q
    |||||||| || ||| |||||  |||| |||||||||||| | | |||| || |||||||||||||||||||||||    
T  35243561 tgttcatgattagtggatatcaaagtaagcaaacaaatgaatggggattgaacattcttaatggagttcacaacca 35243636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 13387795 - 13387722
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaacca 87  Q
    |||||| |||||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    
T  13387795 ttcatgattcgtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaacca 13387722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 16369 - 16260
Alignment:
Q  103 tttagaaagacacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgtta 202  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| ||    
T  16369 tttagaaggacacattcttgccggtagattaaaggaggaagacaagaagattgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgata 16270  T
Q  203 aatttgaaga 212  Q
     |||||||||    
T  16269 catttgaaga 16260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 1841 - 2039
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  1841 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 1940  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || |||||||||    
T  1941 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacatttgaaga 2039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 12220 - 12429
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||| ||||| |  ||| | |    ||||||| |    
T  12220 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcaaaaccatgccatggagctggctttagaagg 12319  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaag 211  Q
    |||||| ||| | |||||||||| |||||| | ||||||| ||||| ||||||||||||||||   | ||||||||| | |||||||| || ||||||||    
T  12320 acacattctttccggtagattaatggaggacgacaagaagattgtacgtgacttgaccaagagaaagatgcttccaagaaatattttgatacatttgaag 12419  T
Q  212 accacaagac 221  Q
    | || |||||    
T  12420 aacaaaagac 12429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 273 - 111
Alignment:
Q  12 tgttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaag 111  Q
    |||||||| || ||| |||||  |||| ||||||||| || | | |||| || ||||||||||||||||||||||| | |||| | |    ||||||| |    
T  273 tgttcatgattagtggatatcaaagtaagcaaacaaaggaatggtgattgaacattcttaatggagttcacaaccatgcgatggagccggctttagaagg 174  T
Q  112 acacatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagag 174  Q
    |||||| ||| || ||||| |||||||| | | ||||||| ||||| ||||||||||||||||    
T  173 acacattcttacgagtagactaaaggagaacgacaagaagattgtacgtgacttgaccaagag 111  T

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Target: scaffold0101 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 33769 - 33967
Alignment:
Q  14 ttcatggttcgtgaatatcttagtaggcaaacaaatgattcgagattaaatattcttaatggagttcacaaccaagagatgtaacgaagtttagaaagac 113  Q
    |||||| || ||| |||||  |||| ||||||||| || | | |||| || |||||||||||||||||||||||    ||| | |    ||||||| |||    
T  33769 ttcatgattagtggatatcaaagtaagcaaacaaaggaatggggattgaacattcttaatggagttcacaaccatcccatggagccggctttagaaggac 33868  T
Q  114 acatgcttgcgggtagattaaaggaggatggcaagaagcttgtatgtgacttgaccaagagtttggtgcttccaaaacatattttgttaaatttgaaga 212  Q
    |||| ||||| ||||||||||||||||| | ||||||| | ||| ||||||||||||||||   | ||||||||| | |||||||| || | |||||||    
T  33869 acattcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaagagcaagatgcttccaagaaatattttgatacacttgaaga 33967  T

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