View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_247 (Length: 234)
Name: NF10201A_low_247
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_247 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 28 - 215
Target Start/End: Complemental strand, 38124832 - 38124647
Alignment:
| Q |
28 |
cacagacaagcacacacaaaaacaaattcagctgtgtaagtagaaaaaagtgttttcaactgtagatcgtggaatatagcagtttgttcaaactctatta |
127 |
Q |
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| T |
38124832 |
cacagacaagcacaca--aaaacaaattcagctgtgtaagtagaaaaaagtgttttcaagtgtagatcgtggaatatagcagtttgttcaaactctatta |
38124735 |
T |
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| Q |
128 |
agctacagagtttcatagctactatttgacatcactttgttctaaacagcgtatcacgaaccaatagcaatttatttaaattccatag |
215 |
Q |
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| T |
38124734 |
agttacagagtttcatagctactatttgacatcactttgttctaaacagcgtatcacgaaccaatagcaatttatttaaattccatag |
38124647 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 13510301 - 13510345
Alignment:
| Q |
150 |
tatttgacatcactttgttctaaacagcgtatcacgaaccaatag |
194 |
Q |
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| T |
13510301 |
tatttgacatcactttgtactaaatagcgtttcacgaaacaatag |
13510345 |
T |
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