View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_248 (Length: 233)
Name: NF10201A_low_248
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_248 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0159 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 5794330 - 5794562
Alignment:
| Q |
1 |
aaaataggaaggtttgcatctcaaggaattcttacattaacgaacgtaactgatgggtctcaaggcactcgaagagaagaatttatctgtccttatcaaa |
100 |
Q |
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| T |
5794330 |
aaaataggaaggtttgcatctcaaggaattcttacattaacgaacgtaactgatgggtctcaaggcactcgaagagaagaatttatctgtccttatgaaa |
5794429 |
T |
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| Q |
101 |
attagacaggctcaggagagcgtattgttcataacatttctaagacttgctgattacgaatcaagcatcgctcaatttgatgaatttgtctgagtgaggg |
200 |
Q |
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| T |
5794430 |
attagacaggctcgggagagcgtattgttcataacatttctaagacttgctgattacgaatcaagcatcgctcaatttgatgaatttgtctgagtgaggg |
5794529 |
T |
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| Q |
201 |
ttcatatggacggataggtaatggaagattcgg |
233 |
Q |
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| T |
5794530 |
ttcatatggatggataggtaatggaagattcgg |
5794562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 5780831 - 5781053
Alignment:
| Q |
6 |
aggaaggtttgcatctcaaggaattcttacattaacgaacgtaactgatgggtctcaaggcactcgaagagaagaatttatctgtccttatcaaaattag |
105 |
Q |
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| T |
5780831 |
aggaaggtttgcatctcaaggaattcttacattaacgaacataactgatgggtctcaaggcact-----ggaagaatttatctgtccttatcaaaattag |
5780925 |
T |
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| Q |
106 |
acaggctcaggagagcgtattgttcataacatttctaagacttgctgattacgaatcaagcatcgctcaatttgatgaatttgtctgagtgagggttcat |
205 |
Q |
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| T |
5780926 |
acaggctcgggagagcgtattgttcataacatttttaagacttgctgattacgaatcaagcatcgctcaatttgatgaatttggctgagtgagggttcat |
5781025 |
T |
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| Q |
206 |
atggacggataggtaatggaagattcgg |
233 |
Q |
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| T |
5781026 |
atggatggataggtaatagaagattcgg |
5781053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 26163 - 26385
Alignment:
| Q |
6 |
aggaaggtttgcatctcaaggaattcttacattaacgaacgtaactgatgggtctcaaggcactcgaagagaagaatttatctgtccttatcaaaattag |
105 |
Q |
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| T |
26163 |
aggaaggtttgcatctcaaggaattcttacattaacgaacataactgatgggtctcaaggcact-----ggaagaatttatctgtccttatcaaaattag |
26257 |
T |
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| Q |
106 |
acaggctcaggagagcgtattgttcataacatttctaagacttgctgattacgaatcaagcatcgctcaatttgatgaatttgtctgagtgagggttcat |
205 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26258 |
acaggctcgggagagcgtattgttcataacatttttaagacttgctgattacgaatcaagcatcgctcaatttgatgaatttggctgagtgagggttcat |
26357 |
T |
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| Q |
206 |
atggacggataggtaatggaagattcgg |
233 |
Q |
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||||| ||||||||||| |||||||||| |
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| T |
26358 |
atggatggataggtaatagaagattcgg |
26385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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