View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10201A_low_25 (Length: 416)
Name: NF10201A_low_25
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 395
Target Start/End: Original strand, 7733616 - 7734004
Alignment:
| Q |
8 |
tgatatgaaacatcatgtacaacacctcaatgactaaaccatagatttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaaca |
107 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7733616 |
tgatatgaaacatcatgtacaacgcttcaatgactaaaccatagatttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaaca |
7733715 |
T |
|
| Q |
108 |
gaccttcactaacttccagacgaattcttaccaacgcctagaaaggcatcattcattacaaaagcaatgtacaccatttctattatttcaatacctcaca |
207 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7733716 |
gaccttcactaacttccagacgacttcttaccaatgcctagaaaggcctcattcattacaaaagcaatgtacaccatttctattatttcaatgcctcaca |
7733815 |
T |
|
| Q |
208 |
ctctttgttttcatattgacttgagtatccatcttagttttattttggagaggatataatttagtttttggttattaactttgtgtttataaaatattat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7733816 |
ctctttgttttcatattgacttgagtatccatcttagttttattttggagcggatgtaatttagtttttggttattaactttgtgtttataacatattat |
7733915 |
T |
|
| Q |
308 |
aa-nnnnnnnaaacaatacaagcggaaagacggacacctgagtatctatctttccgctctttttattgcgtcaatgcgtataaattttc |
395 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7733916 |
aattttttttaaacaatacaagcggaaagacggacacctgaatatccatctttctgctctttttattgcgtcaatgcgtataaattttc |
7734004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 392
Target Start/End: Complemental strand, 48458269 - 48458236
Alignment:
| Q |
359 |
tccgctctttttattgcgtcaatgcgtataaatt |
392 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
48458269 |
tccgctctttttattgcgttaatgcgtataaatt |
48458236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University