View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10201A_low_254 (Length: 232)
Name: NF10201A_low_254
Description: NF10201A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10201A_low_254 |
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Alignment Details
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 6557623 - 6557680
Alignment:
| Q |
24 |
tgccatacataaggaagttattagatataaactgctgcatatgatgtgcctgtgtaca |
81 |
Q |
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| T |
6557623 |
tgccatacataaggaagttattagatataaactgctgcatatgatgtgcctgtgtaca |
6557680 |
T |
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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 6548945 - 6549003
Alignment:
| Q |
107 |
aacttaggggatacacttgtgaaagctaataatgatttggagatttcacctcttattcta |
166 |
Q |
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| T |
6548945 |
aacttacgggatacacttgtgcaagcta-taatgatttggacatttcagctcttattcta |
6549003 |
T |
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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 6797722 - 6797781
Alignment:
| Q |
111 |
taggggatacacttgtgaaagctaat-aatgatttggagatttcacctcttattctaaat |
169 |
Q |
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| T |
6797722 |
taggtgatacacttgtgcaagctaattaatgatttggagatttcatctcacattctaaat |
6797781 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 31981775 - 31981825
Alignment:
| Q |
121 |
acttgtgaaagctaataatgatttgg-agatttcacctcttattctaaatc |
170 |
Q |
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| T |
31981775 |
acttgtgaaagctaataatgatttggtacatttcacctcttattctaaatc |
31981825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 31981734 - 31981775
Alignment:
| Q |
55 |
ctgctgcatatgatgtgcctgtgtacacaaaacggtttgata |
96 |
Q |
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| T |
31981734 |
ctgctgcatatgatgtgcctgtgtacacaaaatagtttgata |
31981775 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 42151329 - 42151269
Alignment:
| Q |
107 |
aacttaggggatacacttgtgaaagctaataatgatttggagatttcacctcttattctaa |
167 |
Q |
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| T |
42151329 |
aacttaggtgatacatttgtgcaagttaataataatttggagatttcatctttcattctaa |
42151269 |
T |
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